Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SIX4Q9UIU6 AL022342.1-201ENST00000400363 863 ntBASIC18.53■□□□□ 0.56
SIX4Q9UIU6 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC18.53■□□□□ 0.56
SIX4Q9UIU6 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SIX4Q9UIU6 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SIX4Q9UIU6 RPL13AP23-201ENST00000480739 586 ntBASIC18.53■□□□□ 0.56
SIX4Q9UIU6 AC145285.3-201ENST00000564603 959 ntBASIC18.53■□□□□ 0.56
SIX4Q9UIU6 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
SIX4Q9UIU6 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
SIX4Q9UIU6 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC18.53■□□□□ 0.56
SIX4Q9UIU6 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
SIX4Q9UIU6 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SIX4Q9UIU6 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
SIX4Q9UIU6 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
SIX4Q9UIU6 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SIX4Q9UIU6 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC18.53■□□□□ 0.56
SIX4Q9UIU6 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.53■□□□□ 0.56
SIX4Q9UIU6 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SIX4Q9UIU6 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
SIX4Q9UIU6 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.53■□□□□ 0.56
SIX4Q9UIU6 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SIX4Q9UIU6 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
SIX4Q9UIU6 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SIX4Q9UIU6 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
SIX4Q9UIU6 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
SIX4Q9UIU6 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SIX4Q9UIU6 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SIX4Q9UIU6 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.52■□□□□ 0.56
SIX4Q9UIU6 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC18.52■□□□□ 0.56
SIX4Q9UIU6 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC18.52■□□□□ 0.56
SIX4Q9UIU6 IGHV3-65-201ENST00000523210 341 ntBASIC18.52■□□□□ 0.56
SIX4Q9UIU6 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC18.52■□□□□ 0.56
SIX4Q9UIU6 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC18.52■□□□□ 0.56
SIX4Q9UIU6 TERC-201ENST00000602385 541 ntBASIC18.52■□□□□ 0.56
SIX4Q9UIU6 AC005593.1-201ENST00000624894 515 ntBASIC18.52■□□□□ 0.56
SIX4Q9UIU6 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SIX4Q9UIU6 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
SIX4Q9UIU6 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SIX4Q9UIU6 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC18.52■□□□□ 0.55
SIX4Q9UIU6 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC18.52■□□□□ 0.55
SIX4Q9UIU6 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.51■□□□□ 0.55
SIX4Q9UIU6 EGFEM1P-202ENST00000431685 1563 ntBASIC18.51■□□□□ 0.55
SIX4Q9UIU6 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
SIX4Q9UIU6 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.51■□□□□ 0.55
SIX4Q9UIU6 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.51■□□□□ 0.55
SIX4Q9UIU6 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
SIX4Q9UIU6 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SIX4Q9UIU6 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
SIX4Q9UIU6 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
SIX4Q9UIU6 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX4Q9UIU6 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SIX4Q9UIU6 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX4Q9UIU6 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
SIX4Q9UIU6 AP002414.1-201ENST00000391405 1147 ntBASIC18.51■□□□□ 0.55
SIX4Q9UIU6 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC18.51■□□□□ 0.55
SIX4Q9UIU6 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC18.51■□□□□ 0.55
SIX4Q9UIU6 AC009947.1-201ENST00000444350 727 ntBASIC18.51■□□□□ 0.55
SIX4Q9UIU6 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX4Q9UIU6 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.51■□□□□ 0.55
SIX4Q9UIU6 CIPC-205ENST00000555437 566 ntTSL 3 BASIC18.51■□□□□ 0.55
SIX4Q9UIU6 AC034105.1-201ENST00000563488 319 ntBASIC18.51■□□□□ 0.55
SIX4Q9UIU6 AC008667.4-201ENST00000607370 168 ntBASIC18.51■□□□□ 0.55
SIX4Q9UIU6 AF228730.7-201ENST00000641842 219 ntBASIC18.51■□□□□ 0.55
SIX4Q9UIU6 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX4Q9UIU6 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.51■□□□□ 0.55
SIX4Q9UIU6 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX4Q9UIU6 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SIX4Q9UIU6 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.51■□□□□ 0.55
SIX4Q9UIU6 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SIX4Q9UIU6 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX4Q9UIU6 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SIX4Q9UIU6 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SIX4Q9UIU6 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
SIX4Q9UIU6 FZD10-202ENST00000539839 3282 ntBASIC18.5■□□□□ 0.55
SIX4Q9UIU6 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SIX4Q9UIU6 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SIX4Q9UIU6 AC104109.2-201ENST00000602919 1418 ntBASIC18.5■□□□□ 0.55
SIX4Q9UIU6 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SIX4Q9UIU6 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SIX4Q9UIU6 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SIX4Q9UIU6 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.5■□□□□ 0.55
SIX4Q9UIU6 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.5■□□□□ 0.55
SIX4Q9UIU6 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SIX4Q9UIU6 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SIX4Q9UIU6 AC108860.2-201ENST00000562760 2183 ntBASIC18.5■□□□□ 0.55
SIX4Q9UIU6 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SIX4Q9UIU6 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
SIX4Q9UIU6 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC18.5■□□□□ 0.55
SIX4Q9UIU6 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.5■□□□□ 0.55
SIX4Q9UIU6 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC18.5■□□□□ 0.55
SIX4Q9UIU6 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.5■□□□□ 0.55
SIX4Q9UIU6 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SIX4Q9UIU6 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC18.5■□□□□ 0.55
SIX4Q9UIU6 RIN3-211ENST00000557762 517 ntTSL 3 BASIC18.5■□□□□ 0.55
SIX4Q9UIU6 Z83851.2-201ENST00000609564 659 ntBASIC18.5■□□□□ 0.55
SIX4Q9UIU6 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.5■□□□□ 0.55
SIX4Q9UIU6 PGM5P2-202ENST00000637225 1043 ntBASIC18.5■□□□□ 0.55
SIX4Q9UIU6 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SIX4Q9UIU6 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SIX4Q9UIU6 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms