Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SOX3P41225 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.4■□□□□ 0.22
SOX3P41225 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SOX3P41225 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX3P41225 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SOX3P41225 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.4■□□□□ 0.22
SOX3P41225 AC100803.2-201ENST00000562459 1963 ntBASIC16.4■□□□□ 0.22
SOX3P41225 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
SOX3P41225 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.4■□□□□ 0.22
SOX3P41225 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SOX3P41225 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX3P41225 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX3P41225 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SOX3P41225 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.22
SOX3P41225 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.22
SOX3P41225 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
SOX3P41225 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SOX3P41225 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SOX3P41225 INTS4P1-201ENST00000438455 1935 ntBASIC16.39■□□□□ 0.21
SOX3P41225 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.39■□□□□ 0.21
SOX3P41225 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SOX3P41225 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.39■□□□□ 0.21
SOX3P41225 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.39■□□□□ 0.21
SOX3P41225 AL023806.1-201ENST00000603994 1649 ntBASIC16.39■□□□□ 0.21
SOX3P41225 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SOX3P41225 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.39■□□□□ 0.21
SOX3P41225 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SOX3P41225 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SOX3P41225 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.39■□□□□ 0.21
SOX3P41225 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.39■□□□□ 0.21
SOX3P41225 SAPCD2P3-201ENST00000455031 850 ntBASIC16.39■□□□□ 0.21
SOX3P41225 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
SOX3P41225 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC16.39■□□□□ 0.21
SOX3P41225 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.39■□□□□ 0.21
SOX3P41225 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.39■□□□□ 0.21
SOX3P41225 REXO1L6P-202ENST00000619970 1078 ntBASIC16.39■□□□□ 0.21
SOX3P41225 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
SOX3P41225 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.39■□□□□ 0.21
SOX3P41225 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
SOX3P41225 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SOX3P41225 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SOX3P41225 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SOX3P41225 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SOX3P41225 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.39■□□□□ 0.21
SOX3P41225 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SOX3P41225 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
SOX3P41225 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.39■□□□□ 0.21
SOX3P41225 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
SOX3P41225 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SOX3P41225 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC16.38■□□□□ 0.21
SOX3P41225 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.38■□□□□ 0.21
SOX3P41225 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
SOX3P41225 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SOX3P41225 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.38■□□□□ 0.21
SOX3P41225 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.38■□□□□ 0.21
SOX3P41225 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.38■□□□□ 0.21
SOX3P41225 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
SOX3P41225 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 AC026396.1-201ENST00000419388 421 ntBASIC16.38■□□□□ 0.21
SOX3P41225 AC007967.3-201ENST00000434308 558 ntBASIC16.38■□□□□ 0.21
SOX3P41225 AC079781.3-201ENST00000449110 356 ntBASIC16.38■□□□□ 0.21
SOX3P41225 AC132008.2-207ENST00000454517 770 ntBASIC16.38■□□□□ 0.21
SOX3P41225 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.38■□□□□ 0.21
SOX3P41225 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.38■□□□□ 0.21
SOX3P41225 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.38■□□□□ 0.21
SOX3P41225 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.38■□□□□ 0.21
SOX3P41225 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
SOX3P41225 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.38■□□□□ 0.21
SOX3P41225 AL031008.1-201ENST00000619963 541 ntBASIC16.38■□□□□ 0.21
SOX3P41225 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.38■□□□□ 0.21
SOX3P41225 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
SOX3P41225 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SOX3P41225 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.38■□□□□ 0.21
SOX3P41225 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC16.38■□□□□ 0.21
SOX3P41225 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
SOX3P41225 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 AC097374.2-201ENST00000618617 1306 ntBASIC16.38■□□□□ 0.21
SOX3P41225 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms