Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHMT2P34897 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SHMT2P34897 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHMT2P34897 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHMT2P34897 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SHMT2P34897 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHMT2P34897 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.05■□□□□ 0.32
SHMT2P34897 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.05■□□□□ 0.32
SHMT2P34897 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHMT2P34897 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
SHMT2P34897 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.05■□□□□ 0.32
SHMT2P34897 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHMT2P34897 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHMT2P34897 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHMT2P34897 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
SHMT2P34897 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHMT2P34897 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHMT2P34897 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.05■□□□□ 0.32
SHMT2P34897 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SHMT2P34897 MYCLP1-201ENST00000372451 1075 ntBASIC17.05■□□□□ 0.32
SHMT2P34897 AC005104.2-201ENST00000427818 678 ntBASIC17.05■□□□□ 0.32
SHMT2P34897 AF238378.1-201ENST00000526806 358 ntBASIC17.05■□□□□ 0.32
SHMT2P34897 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
SHMT2P34897 MTDHP3-201ENST00000594186 672 ntBASIC17.05■□□□□ 0.32
SHMT2P34897 AL121912.1-201ENST00000603683 238 ntBASIC17.05■□□□□ 0.32
SHMT2P34897 AC019129.2-201ENST00000609837 1235 ntBASIC17.05■□□□□ 0.32
SHMT2P34897 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SHMT2P34897 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SHMT2P34897 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
SHMT2P34897 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHMT2P34897 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHMT2P34897 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHMT2P34897 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
SHMT2P34897 NKILA-202ENST00000614771 2598 ntBASIC17.05■□□□□ 0.32
SHMT2P34897 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
SHMT2P34897 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SHMT2P34897 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.05■□□□□ 0.32
SHMT2P34897 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SHMT2P34897 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHMT2P34897 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.05■□□□□ 0.32
SHMT2P34897 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHMT2P34897 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.05■□□□□ 0.32
SHMT2P34897 AL353593.2-201ENST00000602529 1483 ntBASIC17.05■□□□□ 0.32
SHMT2P34897 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHMT2P34897 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.05■□□□□ 0.32
SHMT2P34897 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SHMT2P34897 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
SHMT2P34897 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHMT2P34897 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHMT2P34897 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHMT2P34897 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHMT2P34897 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHMT2P34897 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.04■□□□□ 0.32
SHMT2P34897 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SHMT2P34897 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
SHMT2P34897 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHMT2P34897 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.04■□□□□ 0.32
SHMT2P34897 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHMT2P34897 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHMT2P34897 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHMT2P34897 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHMT2P34897 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SHMT2P34897 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHMT2P34897 PMPCAP1-201ENST00000508114 1576 ntBASIC17.04■□□□□ 0.32
SHMT2P34897 AL049757.1-201ENST00000616842 1596 ntBASIC17.04■□□□□ 0.32
SHMT2P34897 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHMT2P34897 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHMT2P34897 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.04■□□□□ 0.32
SHMT2P34897 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHMT2P34897 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.04■□□□□ 0.32
SHMT2P34897 SCARNA2-201ENST00000458748 420 ntBASIC17.04■□□□□ 0.32
SHMT2P34897 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.04■□□□□ 0.32
SHMT2P34897 AC109462.3-201ENST00000573934 613 ntBASIC17.04■□□□□ 0.32
SHMT2P34897 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SHMT2P34897 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SHMT2P34897 AL121894.2-201ENST00000602977 491 ntBASIC17.04■□□□□ 0.32
SHMT2P34897 LINC01451-201ENST00000623792 534 ntBASIC17.04■□□□□ 0.32
SHMT2P34897 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.04■□□□□ 0.32
SHMT2P34897 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
SHMT2P34897 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHMT2P34897 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHMT2P34897 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHMT2P34897 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHMT2P34897 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHMT2P34897 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHMT2P34897 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.04■□□□□ 0.32
SHMT2P34897 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.04■□□□□ 0.32
SHMT2P34897 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
SHMT2P34897 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
SHMT2P34897 AC011676.5-201ENST00000624864 2660 ntBASIC17.04■□□□□ 0.32
SHMT2P34897 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHMT2P34897 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
SHMT2P34897 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHMT2P34897 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SHMT2P34897 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
SHMT2P34897 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHMT2P34897 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHMT2P34897 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.03■□□□□ 0.32
SHMT2P34897 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
SHMT2P34897 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms