Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 MTMR9LP-203ENST00000426597 1545 ntBASIC20.07■□□□□ 0.8
CTCFP49711 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC20.07■□□□□ 0.8
CTCFP49711 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
CTCFP49711 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CTCFP49711 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC20.06■□□□□ 0.8
CTCFP49711 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC20.06■□□□□ 0.8
CTCFP49711 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CTCFP49711 ELK2AP-201ENST00000392510 1007 ntBASIC20.06■□□□□ 0.8
CTCFP49711 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CTCFP49711 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC20.06■□□□□ 0.8
CTCFP49711 AC092552.1-201ENST00000547243 906 ntBASIC20.06■□□□□ 0.8
CTCFP49711 AL135744.1-201ENST00000565098 629 ntBASIC20.06■□□□□ 0.8
CTCFP49711 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC20.06■□□□□ 0.8
CTCFP49711 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
CTCFP49711 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CTCFP49711 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
CTCFP49711 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CTCFP49711 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CTCFP49711 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CTCFP49711 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CTCFP49711 AKAP8P1-201ENST00000434743 1349 ntBASIC20.05■□□□□ 0.8
CTCFP49711 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CTCFP49711 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CTCFP49711 PI4KAP1-204ENST00000612579 1703 ntBASIC20.05■□□□□ 0.8
CTCFP49711 AC022144.1-201ENST00000602255 1580 ntBASIC20.05■□□□□ 0.8
CTCFP49711 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CTCFP49711 FP475955.4-201ENST00000623131 1990 ntBASIC20.05■□□□□ 0.8
CTCFP49711 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC20.05■□□□□ 0.8
CTCFP49711 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CTCFP49711 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC20.05■□□□□ 0.8
CTCFP49711 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CTCFP49711 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
CTCFP49711 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CTCFP49711 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC20.05■□□□□ 0.8
CTCFP49711 KRT8P23-201ENST00000560090 1207 ntBASIC20.05■□□□□ 0.8
CTCFP49711 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC20.05■□□□□ 0.8
CTCFP49711 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
CTCFP49711 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CTCFP49711 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CTCFP49711 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC20.05■□□□□ 0.8
CTCFP49711 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.05■□□□□ 0.8
CTCFP49711 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CTCFP49711 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
CTCFP49711 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC20.04■□□□□ 0.8
CTCFP49711 AC120498.9-201ENST00000339021 3867 ntBASIC20.04■□□□□ 0.8
CTCFP49711 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CTCFP49711 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CTCFP49711 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CTCFP49711 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CTCFP49711 REXO1L6P-201ENST00000603433 1515 ntBASIC20.04■□□□□ 0.8
CTCFP49711 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC20.04■□□□□ 0.8
CTCFP49711 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CTCFP49711 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
CTCFP49711 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CTCFP49711 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CTCFP49711 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
CTCFP49711 AL512384.1-201ENST00000406683 331 ntBASIC20.04■□□□□ 0.8
CTCFP49711 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC20.04■□□□□ 0.8
CTCFP49711 SPCS2P4-201ENST00000436160 681 ntBASIC20.04■□□□□ 0.8
CTCFP49711 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC20.04■□□□□ 0.8
CTCFP49711 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CTCFP49711 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CTCFP49711 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC20.04■□□□□ 0.8
CTCFP49711 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CTCFP49711 AC140912.1-201ENST00000577171 1054 ntBASIC20.04■□□□□ 0.8
CTCFP49711 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CTCFP49711 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CTCFP49711 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CTCFP49711 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
CTCFP49711 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CTCFP49711 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CTCFP49711 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTCFP49711 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
CTCFP49711 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTCFP49711 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CTCFP49711 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTCFP49711 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTCFP49711 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CTCFP49711 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC20.03■□□□□ 0.8
CTCFP49711 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC20.03■□□□□ 0.8
CTCFP49711 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTCFP49711 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
CTCFP49711 RPF1-202ENST00000370656 724 ntTSL 2 BASIC20.03■□□□□ 0.8
CTCFP49711 AC140658.5-201ENST00000438532 169 ntBASIC20.03■□□□□ 0.8
CTCFP49711 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC20.03■□□□□ 0.8
CTCFP49711 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC20.03■□□□□ 0.8
CTCFP49711 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC20.03■□□□□ 0.8
CTCFP49711 MIR6787-201ENST00000616675 61 ntBASIC20.03■□□□□ 0.8
CTCFP49711 AL590560.3-201ENST00000623350 461 ntBASIC20.03■□□□□ 0.8
CTCFP49711 AC084121.4-201ENST00000641598 221 ntBASIC20.03■□□□□ 0.8
CTCFP49711 AF228730.8-201ENST00000642140 221 ntBASIC20.03■□□□□ 0.8
CTCFP49711 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTCFP49711 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTCFP49711 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTCFP49711 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTCFP49711 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CTCFP49711 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTCFP49711 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTCFP49711 AC100757.3-201ENST00000622361 1406 ntBASIC20.02■□□□□ 0.8
CTCFP49711 UXT-AS1-201ENST00000590504 1525 ntBASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms