Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
MSX1P28360 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
MSX1P28360 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
MSX1P28360 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
MSX1P28360 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC15.97■□□□□ 0.15
MSX1P28360 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC15.97■□□□□ 0.15
MSX1P28360 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC15.97■□□□□ 0.15
MSX1P28360 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
MSX1P28360 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSX1P28360 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSX1P28360 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSX1P28360 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
MSX1P28360 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
MSX1P28360 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
MSX1P28360 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC15.97■□□□□ 0.15
MSX1P28360 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
MSX1P28360 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC15.97■□□□□ 0.15
MSX1P28360 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSX1P28360 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
MSX1P28360 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSX1P28360 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSX1P28360 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC15.97■□□□□ 0.15
MSX1P28360 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.97■□□□□ 0.15
MSX1P28360 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
MSX1P28360 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC15.97■□□□□ 0.15
MSX1P28360 RNPS1P1-201ENST00000507437 918 ntBASIC15.97■□□□□ 0.15
MSX1P28360 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
MSX1P28360 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC15.97■□□□□ 0.15
MSX1P28360 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC15.97■□□□□ 0.15
MSX1P28360 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC15.97■□□□□ 0.15
MSX1P28360 AC073592.5-201ENST00000624854 528 ntBASIC15.97■□□□□ 0.15
MSX1P28360 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC15.97■□□□□ 0.15
MSX1P28360 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
MSX1P28360 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
MSX1P28360 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSX1P28360 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC15.97■□□□□ 0.15
MSX1P28360 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
MSX1P28360 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
MSX1P28360 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
MSX1P28360 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC15.97■□□□□ 0.15
MSX1P28360 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
MSX1P28360 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
MSX1P28360 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
MSX1P28360 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC15.96■□□□□ 0.15
MSX1P28360 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSX1P28360 AMT-250ENST00000637682 1823 ntTSL 5 BASIC15.96■□□□□ 0.15
MSX1P28360 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
MSX1P28360 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC15.96■□□□□ 0.15
MSX1P28360 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSX1P28360 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC15.96■□□□□ 0.15
MSX1P28360 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC15.96■□□□□ 0.15
MSX1P28360 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
MSX1P28360 AP005117.1-201ENST00000584346 1413 ntBASIC15.96■□□□□ 0.15
MSX1P28360 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
MSX1P28360 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC15.96■□□□□ 0.15
MSX1P28360 MED16-201ENST00000269814 1199 ntTSL 5 BASIC15.96■□□□□ 0.15
MSX1P28360 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSX1P28360 STK19B-204ENST00000512515 211 ntBASIC15.96■□□□□ 0.15
MSX1P28360 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
MSX1P28360 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC15.96■□□□□ 0.15
MSX1P28360 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC15.96■□□□□ 0.15
MSX1P28360 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
MSX1P28360 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC15.96■□□□□ 0.15
MSX1P28360 AC148477.8-201ENST00000624298 468 ntBASIC15.96■□□□□ 0.15
MSX1P28360 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
MSX1P28360 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSX1P28360 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC15.96■□□□□ 0.15
MSX1P28360 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC15.96■□□□□ 0.15
MSX1P28360 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSX1P28360 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
MSX1P28360 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
MSX1P28360 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
MSX1P28360 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC15.96■□□□□ 0.14
MSX1P28360 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSX1P28360 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
MSX1P28360 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSX1P28360 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
MSX1P28360 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSX1P28360 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
MSX1P28360 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
MSX1P28360 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSX1P28360 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC15.95■□□□□ 0.14
MSX1P28360 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSX1P28360 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSX1P28360 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
MSX1P28360 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
MSX1P28360 ENSA-206ENST00000361631 725 ntTSL 2 BASIC15.95■□□□□ 0.14
MSX1P28360 KLF4P1-201ENST00000412782 1185 ntBASIC15.95■□□□□ 0.14
MSX1P28360 AC018712.1-201ENST00000455767 687 ntBASIC15.95■□□□□ 0.14
MSX1P28360 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC15.95■□□□□ 0.14
MSX1P28360 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC15.95■□□□□ 0.14
MSX1P28360 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.95■□□□□ 0.14
MSX1P28360 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC15.95■□□□□ 0.14
MSX1P28360 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC15.95■□□□□ 0.14
MSX1P28360 AC106730.1-201ENST00000566722 1090 ntBASIC15.95■□□□□ 0.14
MSX1P28360 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC15.95■□□□□ 0.14
MSX1P28360 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
MSX1P28360 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC15.95■□□□□ 0.14
MSX1P28360 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
MSX1P28360 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms