Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDB3O75112 AC079776.2-201ENST00000641154 1609 ntBASIC16.4■□□□□ 0.22
LDB3O75112 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDB3O75112 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.4■□□□□ 0.22
LDB3O75112 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC16.4■□□□□ 0.22
LDB3O75112 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDB3O75112 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDB3O75112 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
LDB3O75112 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LDB3O75112 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LDB3O75112 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDB3O75112 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDB3O75112 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.39■□□□□ 0.21
LDB3O75112 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.39■□□□□ 0.21
LDB3O75112 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LDB3O75112 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDB3O75112 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC16.39■□□□□ 0.21
LDB3O75112 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LDB3O75112 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LDB3O75112 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDB3O75112 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDB3O75112 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
LDB3O75112 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDB3O75112 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
LDB3O75112 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.39■□□□□ 0.21
LDB3O75112 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDB3O75112 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDB3O75112 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.39■□□□□ 0.21
LDB3O75112 SPDYE21P-201ENST00000413323 827 ntBASIC16.39■□□□□ 0.21
LDB3O75112 AL020989.1-201ENST00000422979 469 ntBASIC16.39■□□□□ 0.21
LDB3O75112 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.39■□□□□ 0.21
LDB3O75112 FGFR3P6-201ENST00000457012 610 ntBASIC16.39■□□□□ 0.21
LDB3O75112 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.39■□□□□ 0.21
LDB3O75112 BX005266.1-201ENST00000473402 457 ntBASIC16.39■□□□□ 0.21
LDB3O75112 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.39■□□□□ 0.21
LDB3O75112 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LDB3O75112 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDB3O75112 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.39■□□□□ 0.21
LDB3O75112 AL691432.3-201ENST00000621860 400 ntBASIC16.39■□□□□ 0.21
LDB3O75112 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDB3O75112 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.39■□□□□ 0.21
LDB3O75112 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LDB3O75112 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDB3O75112 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDB3O75112 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LDB3O75112 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LDB3O75112 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
LDB3O75112 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.39■□□□□ 0.21
LDB3O75112 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LDB3O75112 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.39■□□□□ 0.21
LDB3O75112 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LDB3O75112 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.38■□□□□ 0.21
LDB3O75112 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LDB3O75112 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDB3O75112 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
LDB3O75112 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
LDB3O75112 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
LDB3O75112 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDB3O75112 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.38■□□□□ 0.21
LDB3O75112 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
LDB3O75112 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
LDB3O75112 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDB3O75112 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.38■□□□□ 0.21
LDB3O75112 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDB3O75112 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDB3O75112 AC004870.1-201ENST00000315132 882 ntBASIC16.38■□□□□ 0.21
LDB3O75112 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDB3O75112 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LDB3O75112 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LDB3O75112 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC16.38■□□□□ 0.21
LDB3O75112 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LDB3O75112 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.38■□□□□ 0.21
LDB3O75112 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.38■□□□□ 0.21
LDB3O75112 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
LDB3O75112 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.38■□□□□ 0.21
LDB3O75112 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LDB3O75112 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDB3O75112 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.38■□□□□ 0.21
LDB3O75112 NKAPP1-205ENST00000585790 367 ntBASIC16.38■□□□□ 0.21
LDB3O75112 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LDB3O75112 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDB3O75112 AL356309.3-201ENST00000624132 1934 ntBASIC16.38■□□□□ 0.21
LDB3O75112 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.38■□□□□ 0.21
LDB3O75112 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.38■□□□□ 0.21
LDB3O75112 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
LDB3O75112 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.38■□□□□ 0.21
LDB3O75112 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
LDB3O75112 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDB3O75112 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.38■□□□□ 0.21
LDB3O75112 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDB3O75112 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDB3O75112 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.38■□□□□ 0.21
LDB3O75112 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LDB3O75112 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC16.38■□□□□ 0.21
LDB3O75112 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDB3O75112 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC16.38■□□□□ 0.21
LDB3O75112 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDB3O75112 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
LDB3O75112 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB3O75112 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms