Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 AC010980.2-201ENST00000587099 1412 ntBASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 IKBKGP1-201ENST00000612193 1073 ntBASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 AC073111.5-205ENST00000641717 521 ntBASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 AC015656.1-201ENST00000624209 3578 ntBASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC28AQ8IWP9 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 AL355312.1-201ENST00000407115 2176 ntBASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 AC139749.1-202ENST00000617529 3139 ntBASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 AF201337.1-201ENST00000520239 748 ntBASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 VPS53-216ENST00000574029 585 ntTSL 4 BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 AC133552.2-202ENST00000575694 574 ntBASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 NXN-202ENST00000537628 1340 ntTSL 3 BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
CCDC28AQ8IWP9 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms