Protein–RNA interactions for Protein: P35453

HOXD13, Homeobox protein Hox-D13, humanhuman

Predictions only

Length 343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD13P35453 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC19.04■□□□□ 0.64
HOXD13P35453 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HOXD13P35453 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HOXD13P35453 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
HOXD13P35453 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HOXD13P35453 LINC02012-201ENST00000608206 1725 ntBASIC19.03■□□□□ 0.64
HOXD13P35453 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HOXD13P35453 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC19.03■□□□□ 0.64
HOXD13P35453 PRYP5-201ENST00000451909 266 ntBASIC19.03■□□□□ 0.64
HOXD13P35453 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
HOXD13P35453 SIGLEC30P-201ENST00000455569 941 ntBASIC19.03■□□□□ 0.64
HOXD13P35453 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC19.03■□□□□ 0.64
HOXD13P35453 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC19.03■□□□□ 0.64
HOXD13P35453 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
HOXD13P35453 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
HOXD13P35453 PCDHA12-202ENST00000613593 2588 ntBASIC19.03■□□□□ 0.64
HOXD13P35453 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HOXD13P35453 AC020916.1-201ENST00000587762 1774 ntBASIC19.03■□□□□ 0.64
HOXD13P35453 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
HOXD13P35453 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
HOXD13P35453 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC19.03■□□□□ 0.64
HOXD13P35453 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
HOXD13P35453 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC19.03■□□□□ 0.64
HOXD13P35453 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HOXD13P35453 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC19.03■□□□□ 0.64
HOXD13P35453 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC19.02■□□□□ 0.64
HOXD13P35453 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
HOXD13P35453 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
HOXD13P35453 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC19.02■□□□□ 0.64
HOXD13P35453 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HOXD13P35453 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC19.02■□□□□ 0.64
HOXD13P35453 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC19.02■□□□□ 0.64
HOXD13P35453 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HOXD13P35453 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
HOXD13P35453 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
HOXD13P35453 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC19.02■□□□□ 0.64
HOXD13P35453 SAPCD2P3-201ENST00000455031 850 ntBASIC19.02■□□□□ 0.64
HOXD13P35453 EMBP1-201ENST00000458200 901 ntBASIC19.02■□□□□ 0.64
HOXD13P35453 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC19.02■□□□□ 0.64
HOXD13P35453 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
HOXD13P35453 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC19.02■□□□□ 0.64
HOXD13P35453 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC19.02■□□□□ 0.64
HOXD13P35453 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC19.02■□□□□ 0.64
HOXD13P35453 AC064862.7-201ENST00000604520 867 ntBASIC19.02■□□□□ 0.64
HOXD13P35453 AC008608.2-201ENST00000606089 416 ntBASIC19.02■□□□□ 0.64
HOXD13P35453 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
HOXD13P35453 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
HOXD13P35453 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC19.02■□□□□ 0.64
HOXD13P35453 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.02■□□□□ 0.64
HOXD13P35453 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
HOXD13P35453 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC19.02■□□□□ 0.63
HOXD13P35453 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
HOXD13P35453 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HOXD13P35453 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXD13P35453 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXD13P35453 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HOXD13P35453 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC19.01■□□□□ 0.63
HOXD13P35453 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HOXD13P35453 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXD13P35453 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
HOXD13P35453 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HOXD13P35453 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
HOXD13P35453 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
HOXD13P35453 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC19.01■□□□□ 0.63
HOXD13P35453 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.01■□□□□ 0.63
HOXD13P35453 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
HOXD13P35453 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC19.01■□□□□ 0.63
HOXD13P35453 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC19.01■□□□□ 0.63
HOXD13P35453 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HOXD13P35453 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC19.01■□□□□ 0.63
HOXD13P35453 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HOXD13P35453 AL691432.3-201ENST00000621860 400 ntBASIC19.01■□□□□ 0.63
HOXD13P35453 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
HOXD13P35453 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXD13P35453 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC19.01■□□□□ 0.63
HOXD13P35453 AL356309.3-201ENST00000624132 1934 ntBASIC19.01■□□□□ 0.63
HOXD13P35453 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC19.01■□□□□ 0.63
HOXD13P35453 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXD13P35453 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXD13P35453 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXD13P35453 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXD13P35453 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC19.01■□□□□ 0.63
HOXD13P35453 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HOXD13P35453 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC19.01■□□□□ 0.63
HOXD13P35453 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HOXD13P35453 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC19■□□□□ 0.63
HOXD13P35453 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC19■□□□□ 0.63
HOXD13P35453 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
HOXD13P35453 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXD13P35453 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HOXD13P35453 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC19■□□□□ 0.63
HOXD13P35453 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC19■□□□□ 0.63
HOXD13P35453 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC19■□□□□ 0.63
HOXD13P35453 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19■□□□□ 0.63
HOXD13P35453 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC19■□□□□ 0.63
HOXD13P35453 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC19■□□□□ 0.63
HOXD13P35453 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC19■□□□□ 0.63
HOXD13P35453 BMF-207ENST00000559701 630 ntTSL 3 BASIC19■□□□□ 0.63
HOXD13P35453 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC19■□□□□ 0.63
HOXD13P35453 GID4-202ENST00000376345 1391 ntTSL 3 BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms