Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC13.35□□□□□ -0.27
HLA-DMBP28068 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DMBP28068 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DMBP28068 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DMBP28068 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DMBP28068 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC13.35□□□□□ -0.27
HLA-DMBP28068 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DMBP28068 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DMBP28068 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DMBP28068 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
HLA-DMBP28068 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC13.35□□□□□ -0.27
HLA-DMBP28068 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC13.35□□□□□ -0.27
HLA-DMBP28068 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC13.35□□□□□ -0.27
HLA-DMBP28068 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DMBP28068 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DMBP28068 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
HLA-DMBP28068 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
HLA-DMBP28068 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DMBP28068 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC13.34□□□□□ -0.27
HLA-DMBP28068 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DMBP28068 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DMBP28068 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DMBP28068 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DMBP28068 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DMBP28068 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DMBP28068 AC124067.4-201ENST00000519691 2379 ntBASIC13.34□□□□□ -0.27
HLA-DMBP28068 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
HLA-DMBP28068 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DMBP28068 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DMBP28068 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DMBP28068 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DMBP28068 IGHGP-201ENST00000390555 1178 ntBASIC13.34□□□□□ -0.27
HLA-DMBP28068 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DMBP28068 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC13.34□□□□□ -0.27
HLA-DMBP28068 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DMBP28068 VENTXP5-201ENST00000523979 775 ntBASIC13.34□□□□□ -0.27
HLA-DMBP28068 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC13.34□□□□□ -0.27
HLA-DMBP28068 ZNF444P1-201ENST00000559497 298 ntBASIC13.34□□□□□ -0.27
HLA-DMBP28068 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC13.34□□□□□ -0.27
HLA-DMBP28068 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC13.34□□□□□ -0.27
HLA-DMBP28068 DBP-204ENST00000599385 709 ntTSL 3 BASIC13.34□□□□□ -0.27
HLA-DMBP28068 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC13.34□□□□□ -0.27
HLA-DMBP28068 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DMBP28068 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
HLA-DMBP28068 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DMBP28068 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
HLA-DMBP28068 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DMBP28068 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC13.34□□□□□ -0.27
HLA-DMBP28068 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
HLA-DMBP28068 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC13.34□□□□□ -0.27
HLA-DMBP28068 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC13.34□□□□□ -0.27
HLA-DMBP28068 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DMBP28068 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC13.34□□□□□ -0.27
HLA-DMBP28068 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DMBP28068 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DMBP28068 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DMBP28068 AL353692.3-201ENST00000407031 1396 ntBASIC13.33□□□□□ -0.27
HLA-DMBP28068 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
HLA-DMBP28068 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
HLA-DMBP28068 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC13.33□□□□□ -0.27
HLA-DMBP28068 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
HLA-DMBP28068 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
HLA-DMBP28068 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC13.33□□□□□ -0.28
HLA-DMBP28068 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
HLA-DMBP28068 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DMBP28068 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DMBP28068 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DMBP28068 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DMBP28068 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
HLA-DMBP28068 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
HLA-DMBP28068 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DMBP28068 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
HLA-DMBP28068 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
HLA-DMBP28068 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC13.33□□□□□ -0.28
HLA-DMBP28068 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC13.33□□□□□ -0.28
HLA-DMBP28068 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC13.33□□□□□ -0.28
HLA-DMBP28068 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DMBP28068 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
HLA-DMBP28068 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC13.33□□□□□ -0.28
HLA-DMBP28068 AL121956.5-201ENST00000625261 221 ntBASIC13.33□□□□□ -0.28
HLA-DMBP28068 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DMBP28068 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DMBP28068 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC13.33□□□□□ -0.28
HLA-DMBP28068 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DMBP28068 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DMBP28068 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC13.33□□□□□ -0.28
HLA-DMBP28068 BX276092.7-203ENST00000637198 1536 ntBASIC13.33□□□□□ -0.28
HLA-DMBP28068 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DMBP28068 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DMBP28068 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC13.33□□□□□ -0.28
HLA-DMBP28068 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DMBP28068 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DMBP28068 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DMBP28068 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DMBP28068 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DMBP28068 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DMBP28068 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HLA-DMBP28068 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
HLA-DMBP28068 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms