Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
AP4E1Q9UPM8 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
AP4E1Q9UPM8 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
AP4E1Q9UPM8 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
AP4E1Q9UPM8 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 AC046185.3-201ENST00000623228 1824 ntBASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 FOSL1P1-201ENST00000511041 816 ntBASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 MIR3652-201ENST00000579335 131 ntBASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 AC016396.2-201ENST00000562575 1417 ntBASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
AP4E1Q9UPM8 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
AP4E1Q9UPM8 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC18.14■□□□□ 0.5
AP4E1Q9UPM8 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
AP4E1Q9UPM8 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
AP4E1Q9UPM8 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
AP4E1Q9UPM8 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
AP4E1Q9UPM8 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 COX5A-204ENST00000567270 579 ntTSL 3 BASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 MIR5100-201ENST00000579544 119 ntBASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 METTL23-204ENST00000586752 904 ntTSL 2 BASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 AC073592.5-201ENST00000624854 528 ntBASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 AC132938.5-201ENST00000624980 1813 ntBASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
AP4E1Q9UPM8 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
AP4E1Q9UPM8 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms