Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 AC104076.2-201ENST00000448912 469 ntBASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 NAA38-203ENST00000575071 553 ntTSL 2 BASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 AC083849.1-201ENST00000615227 514 ntBASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 WDR6-223ENST00000627177 207 ntTSL 2 BASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLHC1Q8NHS4 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 PPOX-219ENST00000544598 813 ntTSL 2 BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 LINC01023-201ENST00000606054 436 ntBASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 ANKRD20A8P-203ENST00000641373 517 ntBASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 AC010460.3-201ENST00000511359 1579 ntBASIC16.81■□□□□ 0.28
CLHC1Q8NHS4 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.8■□□□□ 0.28
CLHC1Q8NHS4 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms