Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.53
CHD9Q3L8U1 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC18.33■□□□□ 0.53
CHD9Q3L8U1 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CHD9Q3L8U1 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CHD9Q3L8U1 RARRES2P8-201ENST00000566335 367 ntBASIC18.33■□□□□ 0.53
CHD9Q3L8U1 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC18.33■□□□□ 0.53
CHD9Q3L8U1 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC18.33■□□□□ 0.53
CHD9Q3L8U1 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC18.33■□□□□ 0.53
CHD9Q3L8U1 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.33■□□□□ 0.53
CHD9Q3L8U1 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CHD9Q3L8U1 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CHD9Q3L8U1 AC100757.3-201ENST00000622361 1406 ntBASIC18.33■□□□□ 0.53
CHD9Q3L8U1 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC18.33■□□□□ 0.52
CHD9Q3L8U1 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHD9Q3L8U1 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
CHD9Q3L8U1 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
CHD9Q3L8U1 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.33■□□□□ 0.52
CHD9Q3L8U1 AL138828.2-201ENST00000615812 383 ntBASIC18.33■□□□□ 0.52
CHD9Q3L8U1 REXO1L11P-201ENST00000620964 1927 ntBASIC18.33■□□□□ 0.52
CHD9Q3L8U1 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHD9Q3L8U1 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CHD9Q3L8U1 AP000997.3-201ENST00000623333 2250 ntBASIC18.33■□□□□ 0.52
CHD9Q3L8U1 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CHD9Q3L8U1 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC18.33■□□□□ 0.52
CHD9Q3L8U1 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHD9Q3L8U1 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHD9Q3L8U1 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHD9Q3L8U1 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.33■□□□□ 0.52
CHD9Q3L8U1 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CHD9Q3L8U1 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC18.32■□□□□ 0.52
CHD9Q3L8U1 MIR6805-201ENST00000615055 62 ntBASIC18.32■□□□□ 0.52
CHD9Q3L8U1 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC18.32■□□□□ 0.52
CHD9Q3L8U1 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CHD9Q3L8U1 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CHD9Q3L8U1 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.32■□□□□ 0.52
CHD9Q3L8U1 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC18.32■□□□□ 0.52
CHD9Q3L8U1 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC18.32■□□□□ 0.52
CHD9Q3L8U1 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHD9Q3L8U1 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CHD9Q3L8U1 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC18.32■□□□□ 0.52
CHD9Q3L8U1 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHD9Q3L8U1 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
CHD9Q3L8U1 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC18.32■□□□□ 0.52
CHD9Q3L8U1 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHD9Q3L8U1 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC18.32■□□□□ 0.52
CHD9Q3L8U1 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.32■□□□□ 0.52
CHD9Q3L8U1 UXT-AS1-201ENST00000590504 1525 ntBASIC18.32■□□□□ 0.52
CHD9Q3L8U1 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC18.32■□□□□ 0.52
CHD9Q3L8U1 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.32■□□□□ 0.52
CHD9Q3L8U1 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC18.32■□□□□ 0.52
CHD9Q3L8U1 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC18.32■□□□□ 0.52
CHD9Q3L8U1 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC18.32■□□□□ 0.52
CHD9Q3L8U1 IGHV3-71-201ENST00000523324 359 ntBASIC18.32■□□□□ 0.52
CHD9Q3L8U1 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC18.32■□□□□ 0.52
CHD9Q3L8U1 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.32■□□□□ 0.52
CHD9Q3L8U1 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHD9Q3L8U1 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHD9Q3L8U1 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
CHD9Q3L8U1 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CHD9Q3L8U1 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC18.31■□□□□ 0.52
CHD9Q3L8U1 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHD9Q3L8U1 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC18.31■□□□□ 0.52
CHD9Q3L8U1 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC18.31■□□□□ 0.52
CHD9Q3L8U1 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC18.31■□□□□ 0.52
CHD9Q3L8U1 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC18.31■□□□□ 0.52
CHD9Q3L8U1 GPR53P-205ENST00000457298 1084 ntBASIC18.31■□□□□ 0.52
CHD9Q3L8U1 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC18.31■□□□□ 0.52
CHD9Q3L8U1 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC18.31■□□□□ 0.52
CHD9Q3L8U1 KRT8P23-201ENST00000560090 1207 ntBASIC18.31■□□□□ 0.52
CHD9Q3L8U1 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC18.31■□□□□ 0.52
CHD9Q3L8U1 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.31■□□□□ 0.52
CHD9Q3L8U1 AC093677.2-201ENST00000600169 1863 ntBASIC18.31■□□□□ 0.52
CHD9Q3L8U1 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHD9Q3L8U1 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CHD9Q3L8U1 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CHD9Q3L8U1 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHD9Q3L8U1 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CHD9Q3L8U1 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
CHD9Q3L8U1 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC18.31■□□□□ 0.52
CHD9Q3L8U1 DUTP2-201ENST00000519164 463 ntBASIC18.31■□□□□ 0.52
CHD9Q3L8U1 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC18.31■□□□□ 0.52
CHD9Q3L8U1 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC18.31■□□□□ 0.52
CHD9Q3L8U1 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
CHD9Q3L8U1 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.3■□□□□ 0.52
CHD9Q3L8U1 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHD9Q3L8U1 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
CHD9Q3L8U1 HNRNPRP1-201ENST00000453465 1695 ntBASIC18.3■□□□□ 0.52
CHD9Q3L8U1 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHD9Q3L8U1 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHD9Q3L8U1 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC18.3■□□□□ 0.52
CHD9Q3L8U1 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC18.3■□□□□ 0.52
CHD9Q3L8U1 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC18.3■□□□□ 0.52
CHD9Q3L8U1 AL033527.4-201ENST00000641026 673 ntBASIC18.3■□□□□ 0.52
CHD9Q3L8U1 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.3■□□□□ 0.52
CHD9Q3L8U1 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHD9Q3L8U1 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHD9Q3L8U1 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.3■□□□□ 0.52
CHD9Q3L8U1 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHD9Q3L8U1 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHD9Q3L8U1 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms