Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.21■□□□□ 0.19
RNF4P78317 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.21■□□□□ 0.19
RNF4P78317 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.21■□□□□ 0.19
RNF4P78317 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.21■□□□□ 0.19
RNF4P78317 AC133963.1-201ENST00000504166 1679 ntBASIC16.21■□□□□ 0.18
RNF4P78317 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.21■□□□□ 0.18
RNF4P78317 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
RNF4P78317 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.18
RNF4P78317 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
RNF4P78317 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF4P78317 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC16.2■□□□□ 0.18
RNF4P78317 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
RNF4P78317 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF4P78317 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
RNF4P78317 AC148477.5-201ENST00000625164 1645 ntBASIC16.2■□□□□ 0.18
RNF4P78317 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RNF4P78317 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.2■□□□□ 0.18
RNF4P78317 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF4P78317 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF4P78317 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RNF4P78317 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF4P78317 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.2■□□□□ 0.18
RNF4P78317 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RNF4P78317 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
RNF4P78317 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.2■□□□□ 0.18
RNF4P78317 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
RNF4P78317 PRYP5-201ENST00000451909 266 ntBASIC16.2■□□□□ 0.18
RNF4P78317 SIGLEC30P-201ENST00000455569 941 ntBASIC16.2■□□□□ 0.18
RNF4P78317 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.2■□□□□ 0.18
RNF4P78317 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.2■□□□□ 0.18
RNF4P78317 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.2■□□□□ 0.18
RNF4P78317 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.2■□□□□ 0.18
RNF4P78317 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC16.2■□□□□ 0.18
RNF4P78317 AC004817.3-201ENST00000602957 2129 ntBASIC16.2■□□□□ 0.18
RNF4P78317 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF4P78317 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF4P78317 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF4P78317 AC009336.1-201ENST00000608941 1553 ntBASIC16.2■□□□□ 0.18
RNF4P78317 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
RNF4P78317 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
RNF4P78317 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF4P78317 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF4P78317 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.2■□□□□ 0.18
RNF4P78317 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF4P78317 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF4P78317 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RNF4P78317 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF4P78317 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.19■□□□□ 0.18
RNF4P78317 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.19■□□□□ 0.18
RNF4P78317 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.19■□□□□ 0.18
RNF4P78317 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.19■□□□□ 0.18
RNF4P78317 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF4P78317 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.19■□□□□ 0.18
RNF4P78317 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC16.19■□□□□ 0.18
RNF4P78317 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RNF4P78317 AC068880.1-201ENST00000507289 2297 ntBASIC16.19■□□□□ 0.18
RNF4P78317 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
RNF4P78317 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC16.19■□□□□ 0.18
RNF4P78317 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF4P78317 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF4P78317 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF4P78317 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.19■□□□□ 0.18
RNF4P78317 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
RNF4P78317 AC018712.1-201ENST00000455767 687 ntBASIC16.19■□□□□ 0.18
RNF4P78317 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
RNF4P78317 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.19■□□□□ 0.18
RNF4P78317 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RNF4P78317 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.19■□□□□ 0.18
RNF4P78317 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.19■□□□□ 0.18
RNF4P78317 AL773604.1-201ENST00000617417 272 ntBASIC16.19■□□□□ 0.18
RNF4P78317 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.19■□□□□ 0.18
RNF4P78317 AC148477.8-201ENST00000624298 468 ntBASIC16.19■□□□□ 0.18
RNF4P78317 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF4P78317 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RNF4P78317 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF4P78317 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF4P78317 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
RNF4P78317 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF4P78317 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
RNF4P78317 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
RNF4P78317 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
RNF4P78317 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC16.18■□□□□ 0.18
RNF4P78317 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF4P78317 AL133373.2-201ENST00000623187 2828 ntBASIC16.18■□□□□ 0.18
RNF4P78317 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF4P78317 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
RNF4P78317 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RNF4P78317 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.18■□□□□ 0.18
RNF4P78317 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.18■□□□□ 0.18
RNF4P78317 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF4P78317 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
RNF4P78317 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RNF4P78317 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF4P78317 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF4P78317 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF4P78317 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RNF4P78317 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RNF4P78317 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
RNF4P78317 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.18■□□□□ 0.18
RNF4P78317 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms