Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL6A3P12111 AC104989.1-201ENST00000519711 778 ntBASIC18.02■□□□□ 0.48
COL6A3P12111 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC18.02■□□□□ 0.48
COL6A3P12111 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC18.02■□□□□ 0.47
COL6A3P12111 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL6A3P12111 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL6A3P12111 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC18.01■□□□□ 0.47
COL6A3P12111 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC18.01■□□□□ 0.47
COL6A3P12111 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC18.01■□□□□ 0.47
COL6A3P12111 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL6A3P12111 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC18.01■□□□□ 0.47
COL6A3P12111 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL6A3P12111 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
COL6A3P12111 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC18.01■□□□□ 0.47
COL6A3P12111 AC015967.2-201ENST00000624092 234 ntBASIC18.01■□□□□ 0.47
COL6A3P12111 AC006435.4-201ENST00000625037 234 ntBASIC18.01■□□□□ 0.47
COL6A3P12111 AL356737.1-201ENST00000634391 234 ntBASIC18.01■□□□□ 0.47
COL6A3P12111 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL6A3P12111 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL6A3P12111 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
COL6A3P12111 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL6A3P12111 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC18.01■□□□□ 0.47
COL6A3P12111 AC105129.2-201ENST00000559536 390 ntBASIC18.01■□□□□ 0.47
COL6A3P12111 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC18.01■□□□□ 0.47
COL6A3P12111 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC18.01■□□□□ 0.47
COL6A3P12111 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL6A3P12111 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL6A3P12111 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.01■□□□□ 0.47
COL6A3P12111 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL6A3P12111 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC18■□□□□ 0.47
COL6A3P12111 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC18■□□□□ 0.47
COL6A3P12111 LINC00982-205ENST00000420957 435 ntBASIC18■□□□□ 0.47
COL6A3P12111 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
COL6A3P12111 AC135586.1-201ENST00000539323 574 ntBASIC18■□□□□ 0.47
COL6A3P12111 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC18■□□□□ 0.47
COL6A3P12111 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC18■□□□□ 0.47
COL6A3P12111 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL6A3P12111 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL6A3P12111 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL6A3P12111 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL6A3P12111 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC18■□□□□ 0.47
COL6A3P12111 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL6A3P12111 GGCT-203ENST00000409144 836 ntTSL 2 BASIC18■□□□□ 0.47
COL6A3P12111 CSF2RBP1-201ENST00000447905 391 ntBASIC18■□□□□ 0.47
COL6A3P12111 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL6A3P12111 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL6A3P12111 AC133552.6-201ENST00000613406 534 ntBASIC18■□□□□ 0.47
COL6A3P12111 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL6A3P12111 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
COL6A3P12111 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL6A3P12111 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18■□□□□ 0.47
COL6A3P12111 BTBD7P1-201ENST00000447253 1453 ntBASIC17.99■□□□□ 0.47
COL6A3P12111 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A3P12111 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A3P12111 AC007389.4-201ENST00000454674 793 ntBASIC17.99■□□□□ 0.47
COL6A3P12111 SPDYE18-201ENST00000510091 1050 ntBASIC17.99■□□□□ 0.47
COL6A3P12111 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC17.99■□□□□ 0.47
COL6A3P12111 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.99■□□□□ 0.47
COL6A3P12111 MYLKP1-201ENST00000509077 1580 ntBASIC17.99■□□□□ 0.47
COL6A3P12111 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A3P12111 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.99■□□□□ 0.47
COL6A3P12111 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
COL6A3P12111 APOC3-202ENST00000375345 604 ntTSL 5 BASIC17.99■□□□□ 0.47
COL6A3P12111 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A3P12111 SATB1-217ENST00000493952 626 ntTSL 3 BASIC17.99■□□□□ 0.47
COL6A3P12111 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC17.99■□□□□ 0.47
COL6A3P12111 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A3P12111 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A3P12111 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
COL6A3P12111 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A3P12111 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
COL6A3P12111 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A3P12111 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
COL6A3P12111 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC17.99■□□□□ 0.47
COL6A3P12111 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A3P12111 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A3P12111 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A3P12111 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC17.99■□□□□ 0.47
COL6A3P12111 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
COL6A3P12111 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A3P12111 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL6A3P12111 CLDN5-201ENST00000403084 2357 ntBASIC17.98■□□□□ 0.47
COL6A3P12111 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL6A3P12111 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC17.98■□□□□ 0.47
COL6A3P12111 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC17.98■□□□□ 0.47
COL6A3P12111 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL6A3P12111 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.98■□□□□ 0.47
COL6A3P12111 ELK1P1-201ENST00000485699 580 ntBASIC17.98■□□□□ 0.47
COL6A3P12111 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.98■□□□□ 0.47
COL6A3P12111 RNA5SP412-201ENST00000516234 123 ntBASIC17.98■□□□□ 0.47
COL6A3P12111 C2orf69P2-201ENST00000562032 1123 ntBASIC17.98■□□□□ 0.47
COL6A3P12111 SPCS2P2-201ENST00000603270 608 ntBASIC17.98■□□□□ 0.47
COL6A3P12111 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC17.98■□□□□ 0.47
COL6A3P12111 SLC7A15P-201ENST00000424028 1363 ntBASIC17.98■□□□□ 0.47
COL6A3P12111 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL6A3P12111 AC087499.5-201ENST00000452760 1342 ntBASIC17.98■□□□□ 0.47
COL6A3P12111 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL6A3P12111 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.98■□□□□ 0.47
COL6A3P12111 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC17.98■□□□□ 0.47
COL6A3P12111 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms