Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
TTC28Q96AY4 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TTC28Q96AY4 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC17.55■□□□□ 0.4
TTC28Q96AY4 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC17.55■□□□□ 0.4
TTC28Q96AY4 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.55■□□□□ 0.4
TTC28Q96AY4 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.55■□□□□ 0.4
TTC28Q96AY4 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC17.55■□□□□ 0.4
TTC28Q96AY4 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC17.55■□□□□ 0.4
TTC28Q96AY4 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC17.55■□□□□ 0.4
TTC28Q96AY4 AC243960.2-201ENST00000600996 747 ntBASIC17.55■□□□□ 0.4
TTC28Q96AY4 AL009183.1-201ENST00000603760 355 ntBASIC17.55■□□□□ 0.4
TTC28Q96AY4 AL021578.1-201ENST00000613646 709 ntBASIC17.55■□□□□ 0.4
TTC28Q96AY4 AC007431.3-201ENST00000623221 587 ntBASIC17.55■□□□□ 0.4
TTC28Q96AY4 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TTC28Q96AY4 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TTC28Q96AY4 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TTC28Q96AY4 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TTC28Q96AY4 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TTC28Q96AY4 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TTC28Q96AY4 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TTC28Q96AY4 AC007375.3-201ENST00000600936 2314 ntBASIC17.55■□□□□ 0.4
TTC28Q96AY4 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TTC28Q96AY4 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
TTC28Q96AY4 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC17.55■□□□□ 0.4
TTC28Q96AY4 AC079328.1-201ENST00000560358 952 ntBASIC17.55■□□□□ 0.4
TTC28Q96AY4 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC17.55■□□□□ 0.4
TTC28Q96AY4 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.55■□□□□ 0.4
TTC28Q96AY4 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
TTC28Q96AY4 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TTC28Q96AY4 AC009336.1-201ENST00000608941 1553 ntBASIC17.54■□□□□ 0.4
TTC28Q96AY4 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TTC28Q96AY4 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC17.54■□□□□ 0.4
TTC28Q96AY4 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TTC28Q96AY4 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TTC28Q96AY4 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TTC28Q96AY4 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TTC28Q96AY4 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
TTC28Q96AY4 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
TTC28Q96AY4 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TTC28Q96AY4 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
TTC28Q96AY4 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.54■□□□□ 0.4
TTC28Q96AY4 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC17.54■□□□□ 0.4
TTC28Q96AY4 GPAA1P2-201ENST00000417923 928 ntBASIC17.54■□□□□ 0.4
TTC28Q96AY4 LINC00982-205ENST00000420957 435 ntBASIC17.54■□□□□ 0.4
TTC28Q96AY4 ACTG1P4-201ENST00000425123 1122 ntBASIC17.54■□□□□ 0.4
TTC28Q96AY4 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC17.54■□□□□ 0.4
TTC28Q96AY4 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC17.54■□□□□ 0.4
TTC28Q96AY4 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC17.54■□□□□ 0.4
TTC28Q96AY4 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC17.54■□□□□ 0.4
TTC28Q96AY4 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC17.54■□□□□ 0.4
TTC28Q96AY4 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC17.54■□□□□ 0.4
TTC28Q96AY4 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC17.54■□□□□ 0.4
TTC28Q96AY4 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TTC28Q96AY4 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
TTC28Q96AY4 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
TTC28Q96AY4 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
TTC28Q96AY4 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
TTC28Q96AY4 AC015936.2-201ENST00000593177 259 ntBASIC17.54■□□□□ 0.4
TTC28Q96AY4 TEX28P1-201ENST00000613479 1221 ntBASIC17.54■□□□□ 0.4
TTC28Q96AY4 TEX28P2-201ENST00000617764 1221 ntBASIC17.54■□□□□ 0.4
TTC28Q96AY4 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
TTC28Q96AY4 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.54■□□□□ 0.4
TTC28Q96AY4 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TTC28Q96AY4 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TTC28Q96AY4 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TTC28Q96AY4 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TTC28Q96AY4 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
TTC28Q96AY4 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TTC28Q96AY4 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
TTC28Q96AY4 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TTC28Q96AY4 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TTC28Q96AY4 NSL1-201ENST00000366976 722 ntTSL 2 BASIC17.54■□□□□ 0.4
TTC28Q96AY4 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
TTC28Q96AY4 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
TTC28Q96AY4 MIR4706-201ENST00000582134 82 ntBASIC17.54■□□□□ 0.4
TTC28Q96AY4 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC17.54■□□□□ 0.4
TTC28Q96AY4 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.53■□□□□ 0.4
TTC28Q96AY4 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TTC28Q96AY4 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TTC28Q96AY4 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC17.53■□□□□ 0.4
TTC28Q96AY4 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TTC28Q96AY4 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TTC28Q96AY4 AC141586.3-201ENST00000562166 1838 ntBASIC17.53■□□□□ 0.4
TTC28Q96AY4 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.53■□□□□ 0.4
TTC28Q96AY4 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC17.53■□□□□ 0.4
TTC28Q96AY4 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.53■□□□□ 0.4
TTC28Q96AY4 AL844908.2-201ENST00000609461 460 ntBASIC17.53■□□□□ 0.4
TTC28Q96AY4 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TTC28Q96AY4 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
TTC28Q96AY4 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.53■□□□□ 0.4
TTC28Q96AY4 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TTC28Q96AY4 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC17.53■□□□□ 0.4
TTC28Q96AY4 CLDN5-201ENST00000403084 2357 ntBASIC17.53■□□□□ 0.4
TTC28Q96AY4 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.53■□□□□ 0.4
TTC28Q96AY4 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.53■□□□□ 0.4
TTC28Q96AY4 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TTC28Q96AY4 AC104457.1-201ENST00000401024 814 ntBASIC17.53■□□□□ 0.4
TTC28Q96AY4 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TTC28Q96AY4 CALR4P-201ENST00000431943 946 ntBASIC17.53■□□□□ 0.4
TTC28Q96AY4 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms