Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 NUS1P2-201ENST00000417358 873 ntBASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 AC125634.1-201ENST00000438758 1403 ntBASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 AC005336.2-201ENST00000593183 939 ntBASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 KLK8-205ENST00000593490 267 ntTSL 3 BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 LINC01711-201ENST00000598340 967 ntBASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PTCHD3Q3KNS1 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 AL645608.8-201ENST00000606034 2086 ntBASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 COX5BP2-201ENST00000392354 334 ntBASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 AC005104.2-201ENST00000427818 678 ntBASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 MINOS1P3-201ENST00000457048 203 ntBASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.16■□□□□ 0.34
PTCHD3Q3KNS1 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PTCHD3Q3KNS1 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTCHD3Q3KNS1 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
PTCHD3Q3KNS1 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
PTCHD3Q3KNS1 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
PTCHD3Q3KNS1 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
PTCHD3Q3KNS1 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTCHD3Q3KNS1 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PTCHD3Q3KNS1 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
PTCHD3Q3KNS1 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PTCHD3Q3KNS1 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
PTCHD3Q3KNS1 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTCHD3Q3KNS1 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTCHD3Q3KNS1 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PTCHD3Q3KNS1 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PTCHD3Q3KNS1 AC007967.3-201ENST00000434308 558 ntBASIC17.15■□□□□ 0.34
PTCHD3Q3KNS1 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.15■□□□□ 0.34
PTCHD3Q3KNS1 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms