Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC12.43□□□□□ -0.42
COL7A1Q02388 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC12.43□□□□□ -0.42
COL7A1Q02388 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC12.43□□□□□ -0.42
COL7A1Q02388 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC12.43□□□□□ -0.42
COL7A1Q02388 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL7A1Q02388 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC12.43□□□□□ -0.42
COL7A1Q02388 AL138828.2-201ENST00000615812 383 ntBASIC12.43□□□□□ -0.42
COL7A1Q02388 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL7A1Q02388 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC12.43□□□□□ -0.42
COL7A1Q02388 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL7A1Q02388 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL7A1Q02388 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
COL7A1Q02388 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
COL7A1Q02388 AL158211.3-201ENST00000607385 239 ntBASIC12.42□□□□□ -0.42
COL7A1Q02388 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL7A1Q02388 BSG-214ENST00000614867 960 ntTSL 3 BASIC12.42□□□□□ -0.42
COL7A1Q02388 SNX12-206ENST00000622259 661 ntTSL 5 BASIC12.42□□□□□ -0.42
COL7A1Q02388 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL7A1Q02388 AC100757.3-201ENST00000622361 1406 ntBASIC12.42□□□□□ -0.42
COL7A1Q02388 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
COL7A1Q02388 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
COL7A1Q02388 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
COL7A1Q02388 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL7A1Q02388 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
COL7A1Q02388 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
COL7A1Q02388 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
COL7A1Q02388 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
COL7A1Q02388 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC12.42□□□□□ -0.42
COL7A1Q02388 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC12.42□□□□□ -0.42
COL7A1Q02388 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC12.42□□□□□ -0.42
COL7A1Q02388 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC12.42□□□□□ -0.42
COL7A1Q02388 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL7A1Q02388 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC12.42□□□□□ -0.42
COL7A1Q02388 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
COL7A1Q02388 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
COL7A1Q02388 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL7A1Q02388 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL7A1Q02388 AC129492.6-201ENST00000611383 1305 ntBASIC12.42□□□□□ -0.42
COL7A1Q02388 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC12.42□□□□□ -0.42
COL7A1Q02388 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC12.42□□□□□ -0.42
COL7A1Q02388 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC12.41□□□□□ -0.42
COL7A1Q02388 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
COL7A1Q02388 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
COL7A1Q02388 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
COL7A1Q02388 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC12.41□□□□□ -0.42
COL7A1Q02388 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL7A1Q02388 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
COL7A1Q02388 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL7A1Q02388 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL7A1Q02388 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL7A1Q02388 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC12.41□□□□□ -0.42
COL7A1Q02388 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL7A1Q02388 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL7A1Q02388 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
COL7A1Q02388 AC093010.1-201ENST00000473625 1624 ntBASIC12.41□□□□□ -0.42
COL7A1Q02388 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
COL7A1Q02388 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC12.41□□□□□ -0.42
COL7A1Q02388 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC12.41□□□□□ -0.42
COL7A1Q02388 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
COL7A1Q02388 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC12.41□□□□□ -0.42
COL7A1Q02388 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
COL7A1Q02388 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL7A1Q02388 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC12.41□□□□□ -0.42
COL7A1Q02388 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC12.41□□□□□ -0.42
COL7A1Q02388 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC12.41□□□□□ -0.42
COL7A1Q02388 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
COL7A1Q02388 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC12.41□□□□□ -0.42
COL7A1Q02388 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC12.41□□□□□ -0.42
COL7A1Q02388 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC12.41□□□□□ -0.42
COL7A1Q02388 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL7A1Q02388 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL7A1Q02388 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC12.41□□□□□ -0.42
COL7A1Q02388 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL7A1Q02388 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
COL7A1Q02388 GIMAP3P-201ENST00000495150 836 ntBASIC12.41□□□□□ -0.42
COL7A1Q02388 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
COL7A1Q02388 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC12.41□□□□□ -0.42
COL7A1Q02388 AC109462.3-201ENST00000573934 613 ntBASIC12.41□□□□□ -0.42
COL7A1Q02388 AC017083.2-201ENST00000608069 979 ntBASIC12.41□□□□□ -0.42
COL7A1Q02388 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL7A1Q02388 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC12.41□□□□□ -0.42
COL7A1Q02388 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL7A1Q02388 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL7A1Q02388 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
COL7A1Q02388 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL7A1Q02388 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL7A1Q02388 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
COL7A1Q02388 UXT-AS1-201ENST00000590504 1525 ntBASIC12.4□□□□□ -0.42
COL7A1Q02388 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL7A1Q02388 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL7A1Q02388 AL671277.1-201ENST00000429656 993 ntBASIC12.4□□□□□ -0.42
COL7A1Q02388 RBPMS2P1-201ENST00000437762 623 ntBASIC12.4□□□□□ -0.42
COL7A1Q02388 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC12.4□□□□□ -0.42
COL7A1Q02388 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC12.4□□□□□ -0.42
COL7A1Q02388 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC12.4□□□□□ -0.42
COL7A1Q02388 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
COL7A1Q02388 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
COL7A1Q02388 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL7A1Q02388 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
COL7A1Q02388 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms