Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL2A1P02458 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC20.32■□□□□ 0.84
COL2A1P02458 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL2A1P02458 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL2A1P02458 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC20.32■□□□□ 0.84
COL2A1P02458 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC20.32■□□□□ 0.84
COL2A1P02458 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.31■□□□□ 0.84
COL2A1P02458 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL2A1P02458 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL2A1P02458 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL2A1P02458 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL2A1P02458 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC20.31■□□□□ 0.84
COL2A1P02458 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC20.31■□□□□ 0.84
COL2A1P02458 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
COL2A1P02458 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC20.31■□□□□ 0.84
COL2A1P02458 METTL23-205ENST00000588302 925 ntTSL 5 BASIC20.31■□□□□ 0.84
COL2A1P02458 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
COL2A1P02458 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC20.31■□□□□ 0.84
COL2A1P02458 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC20.31■□□□□ 0.84
COL2A1P02458 AC092919.2-201ENST00000623631 1645 ntBASIC20.31■□□□□ 0.84
COL2A1P02458 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
COL2A1P02458 AC104581.1-202ENST00000635932 2618 ntBASIC20.31■□□□□ 0.84
COL2A1P02458 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL2A1P02458 GOLGA6L17P-202ENST00000614358 1398 ntBASIC20.31■□□□□ 0.84
COL2A1P02458 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC20.31■□□□□ 0.84
COL2A1P02458 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL2A1P02458 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL2A1P02458 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL2A1P02458 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL2A1P02458 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC20.31■□□□□ 0.84
COL2A1P02458 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
COL2A1P02458 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL2A1P02458 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL2A1P02458 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC20.31■□□□□ 0.84
COL2A1P02458 AC133963.1-201ENST00000504166 1679 ntBASIC20.31■□□□□ 0.84
COL2A1P02458 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
COL2A1P02458 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL2A1P02458 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL2A1P02458 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
COL2A1P02458 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL2A1P02458 NEK7-201ENST00000367383 586 ntTSL 2 BASIC20.3■□□□□ 0.84
COL2A1P02458 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
COL2A1P02458 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC20.3■□□□□ 0.84
COL2A1P02458 PON3-203ENST00000427422 894 ntTSL 3 BASIC20.3■□□□□ 0.84
COL2A1P02458 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL2A1P02458 CYMP-203ENST00000474680 1263 ntBASIC20.3■□□□□ 0.84
COL2A1P02458 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC20.3■□□□□ 0.84
COL2A1P02458 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
COL2A1P02458 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC20.3■□□□□ 0.84
COL2A1P02458 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC20.3■□□□□ 0.84
COL2A1P02458 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL2A1P02458 CCND1-203ENST00000536559 553 ntTSL 3 BASIC20.3■□□□□ 0.84
COL2A1P02458 THTPA-204ENST00000554970 569 ntTSL 4 BASIC20.3■□□□□ 0.84
COL2A1P02458 RNF34-208ENST00000555076 593 ntTSL 3 BASIC20.3■□□□□ 0.84
COL2A1P02458 THTPA-206ENST00000556015 535 ntTSL 3 BASIC20.3■□□□□ 0.84
COL2A1P02458 IGHV3OR16-6-201ENST00000568775 360 ntBASIC20.3■□□□□ 0.84
COL2A1P02458 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL2A1P02458 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC20.3■□□□□ 0.84
COL2A1P02458 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL2A1P02458 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL2A1P02458 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL2A1P02458 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL2A1P02458 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
COL2A1P02458 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
COL2A1P02458 AC140658.5-201ENST00000438532 169 ntBASIC20.3■□□□□ 0.84
COL2A1P02458 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL2A1P02458 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC20.3■□□□□ 0.84
COL2A1P02458 AC112191.1-201ENST00000523689 701 ntBASIC20.3■□□□□ 0.84
COL2A1P02458 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC20.3■□□□□ 0.84
COL2A1P02458 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC20.3■□□□□ 0.84
COL2A1P02458 AC099522.2-201ENST00000607001 744 ntBASIC20.3■□□□□ 0.84
COL2A1P02458 REXO1L3P-201ENST00000622202 1288 ntBASIC20.3■□□□□ 0.84
COL2A1P02458 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
COL2A1P02458 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
COL2A1P02458 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
COL2A1P02458 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL2A1P02458 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC20.29■□□□□ 0.84
COL2A1P02458 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC20.29■□□□□ 0.84
COL2A1P02458 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC20.29■□□□□ 0.84
COL2A1P02458 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL2A1P02458 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL2A1P02458 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL2A1P02458 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL2A1P02458 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL2A1P02458 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC20.29■□□□□ 0.84
COL2A1P02458 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.29■□□□□ 0.84
COL2A1P02458 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL2A1P02458 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL2A1P02458 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC20.29■□□□□ 0.84
COL2A1P02458 AC022145.2-201ENST00000598203 171 ntBASIC20.29■□□□□ 0.84
COL2A1P02458 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC20.29■□□□□ 0.84
COL2A1P02458 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC20.29■□□□□ 0.84
COL2A1P02458 AL645728.2-201ENST00000641974 660 ntBASIC20.29■□□□□ 0.84
COL2A1P02458 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL2A1P02458 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL2A1P02458 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL2A1P02458 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC20.29■□□□□ 0.84
COL2A1P02458 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL2A1P02458 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL2A1P02458 AL121761.2-201ENST00000598007 1648 ntBASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms