Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.15■□□□□ 0.18
CDH11P55287 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDH11P55287 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CDH11P55287 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDH11P55287 AC005332.1-201ENST00000577698 1310 ntBASIC16.15■□□□□ 0.18
CDH11P55287 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDH11P55287 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDH11P55287 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CDH11P55287 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.15■□□□□ 0.18
CDH11P55287 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.15■□□□□ 0.18
CDH11P55287 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
CDH11P55287 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
CDH11P55287 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
CDH11P55287 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
CDH11P55287 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
CDH11P55287 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.18
CDH11P55287 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
CDH11P55287 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CDH11P55287 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CDH11P55287 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CDH11P55287 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CDH11P55287 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CDH11P55287 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CDH11P55287 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CDH11P55287 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC16.14■□□□□ 0.17
CDH11P55287 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CDH11P55287 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CDH11P55287 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
CDH11P55287 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CDH11P55287 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.14■□□□□ 0.17
CDH11P55287 GRAMD4P1-201ENST00000435181 1110 ntBASIC16.14■□□□□ 0.17
CDH11P55287 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CDH11P55287 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.14■□□□□ 0.17
CDH11P55287 AC104390.1-201ENST00000555663 520 ntBASIC16.14■□□□□ 0.17
CDH11P55287 ZNF444P1-201ENST00000559497 298 ntBASIC16.14■□□□□ 0.17
CDH11P55287 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
CDH11P55287 AC112497.1-201ENST00000624824 639 ntBASIC16.14■□□□□ 0.17
CDH11P55287 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CDH11P55287 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CDH11P55287 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
CDH11P55287 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CDH11P55287 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CDH11P55287 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.14■□□□□ 0.17
CDH11P55287 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
CDH11P55287 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
CDH11P55287 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CDH11P55287 AC022898.2-201ENST00000616822 1312 ntBASIC16.14■□□□□ 0.17
CDH11P55287 LINC00304-203ENST00000565008 1864 ntBASIC16.14■□□□□ 0.17
CDH11P55287 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CDH11P55287 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.14■□□□□ 0.17
CDH11P55287 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CDH11P55287 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
CDH11P55287 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.14■□□□□ 0.17
CDH11P55287 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CDH11P55287 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CDH11P55287 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
CDH11P55287 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.13■□□□□ 0.17
CDH11P55287 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH11P55287 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH11P55287 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH11P55287 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH11P55287 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CDH11P55287 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.13■□□□□ 0.17
CDH11P55287 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH11P55287 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH11P55287 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.13■□□□□ 0.17
CDH11P55287 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CDH11P55287 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CDH11P55287 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CDH11P55287 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC16.13■□□□□ 0.17
CDH11P55287 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC16.13■□□□□ 0.17
CDH11P55287 RASA4DP-201ENST00000460726 1199 ntBASIC16.13■□□□□ 0.17
CDH11P55287 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC16.13■□□□□ 0.17
CDH11P55287 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC16.13■□□□□ 0.17
CDH11P55287 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC16.13■□□□□ 0.17
CDH11P55287 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC16.13■□□□□ 0.17
CDH11P55287 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.13■□□□□ 0.17
CDH11P55287 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC16.13■□□□□ 0.17
CDH11P55287 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
CDH11P55287 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC16.13■□□□□ 0.17
CDH11P55287 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.13■□□□□ 0.17
CDH11P55287 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH11P55287 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH11P55287 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH11P55287 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH11P55287 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH11P55287 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH11P55287 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH11P55287 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
CDH11P55287 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH11P55287 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
CDH11P55287 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CDH11P55287 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH11P55287 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.13■□□□□ 0.17
CDH11P55287 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CDH11P55287 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH11P55287 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.13■□□□□ 0.17
CDH11P55287 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH11P55287 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CDH11P55287 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms