Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
LHX3Q9UBR4 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.71■□□□□ 0.43
LHX3Q9UBR4 AL022326.1-202ENST00000641533 845 ntBASIC17.71■□□□□ 0.43
LHX3Q9UBR4 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LHX3Q9UBR4 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LHX3Q9UBR4 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.71■□□□□ 0.43
LHX3Q9UBR4 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LHX3Q9UBR4 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
LHX3Q9UBR4 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LHX3Q9UBR4 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.71■□□□□ 0.42
LHX3Q9UBR4 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.42
LHX3Q9UBR4 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
LHX3Q9UBR4 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 FDX1P1-201ENST00000449115 551 ntBASIC17.7■□□□□ 0.42
LHX3Q9UBR4 PPIE-208ENST00000470213 927 ntTSL 3 BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 RNPS1P1-201ENST00000507437 918 ntBASIC17.7■□□□□ 0.42
LHX3Q9UBR4 AC073648.2-201ENST00000510116 352 ntBASIC17.7■□□□□ 0.42
LHX3Q9UBR4 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 KLK8-205ENST00000593490 267 ntTSL 3 BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 MTDHP4-201ENST00000600287 670 ntBASIC17.7■□□□□ 0.42
LHX3Q9UBR4 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
LHX3Q9UBR4 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 HNRNPDP1-201ENST00000439535 754 ntBASIC17.69■□□□□ 0.42
LHX3Q9UBR4 PRYP5-201ENST00000451909 266 ntBASIC17.69■□□□□ 0.42
LHX3Q9UBR4 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 AC046185.3-201ENST00000623228 1824 ntBASIC17.69■□□□□ 0.42
LHX3Q9UBR4 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LHX3Q9UBR4 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 SIGLEC30P-201ENST00000455569 941 ntBASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms