Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
COL5A1P20908 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.75■□□□□ 0.27
COL5A1P20908 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.75■□□□□ 0.27
COL5A1P20908 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC16.75■□□□□ 0.27
COL5A1P20908 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
COL5A1P20908 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC16.75■□□□□ 0.27
COL5A1P20908 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL5A1P20908 FALEC-201ENST00000416894 566 ntTSL 3 BASIC16.75■□□□□ 0.27
COL5A1P20908 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.75■□□□□ 0.27
COL5A1P20908 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL5A1P20908 SLBP-205ENST00000488267 987 ntTSL 2 BASIC16.75■□□□□ 0.27
COL5A1P20908 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC16.75■□□□□ 0.27
COL5A1P20908 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.75■□□□□ 0.27
COL5A1P20908 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC16.75■□□□□ 0.27
COL5A1P20908 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC16.75■□□□□ 0.27
COL5A1P20908 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC16.75■□□□□ 0.27
COL5A1P20908 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL5A1P20908 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
COL5A1P20908 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL5A1P20908 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL5A1P20908 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL5A1P20908 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.75■□□□□ 0.27
COL5A1P20908 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC16.75■□□□□ 0.27
COL5A1P20908 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL5A1P20908 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL5A1P20908 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL5A1P20908 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL5A1P20908 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.75■□□□□ 0.27
COL5A1P20908 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC16.75■□□□□ 0.27
COL5A1P20908 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
COL5A1P20908 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL5A1P20908 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL5A1P20908 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.75■□□□□ 0.27
COL5A1P20908 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.75■□□□□ 0.27
COL5A1P20908 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL5A1P20908 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL5A1P20908 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL5A1P20908 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL5A1P20908 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
COL5A1P20908 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL5A1P20908 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL5A1P20908 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL5A1P20908 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL5A1P20908 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL5A1P20908 AC067863.1-201ENST00000494933 530 ntBASIC16.75■□□□□ 0.27
COL5A1P20908 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC16.75■□□□□ 0.27
COL5A1P20908 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL5A1P20908 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
COL5A1P20908 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC16.75■□□□□ 0.27
COL5A1P20908 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC16.75■□□□□ 0.27
COL5A1P20908 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.75■□□□□ 0.27
COL5A1P20908 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.75■□□□□ 0.27
COL5A1P20908 AL121761.2-201ENST00000598007 1648 ntBASIC16.75■□□□□ 0.27
COL5A1P20908 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC16.75■□□□□ 0.27
COL5A1P20908 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC16.75■□□□□ 0.27
COL5A1P20908 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL5A1P20908 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC16.75■□□□□ 0.27
COL5A1P20908 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC16.75■□□□□ 0.27
COL5A1P20908 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.75■□□□□ 0.27
COL5A1P20908 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC16.75■□□□□ 0.27
COL5A1P20908 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL5A1P20908 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL5A1P20908 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL5A1P20908 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
COL5A1P20908 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL5A1P20908 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL5A1P20908 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.74■□□□□ 0.27
COL5A1P20908 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL5A1P20908 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL5A1P20908 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL5A1P20908 THTPA-204ENST00000554970 569 ntTSL 4 BASIC16.74■□□□□ 0.27
COL5A1P20908 THTPA-206ENST00000556015 535 ntTSL 3 BASIC16.74■□□□□ 0.27
COL5A1P20908 AC004449.1-201ENST00000564240 433 ntBASIC16.74■□□□□ 0.27
COL5A1P20908 MNT-208ENST00000575394 606 ntTSL 4 BASIC16.74■□□□□ 0.27
COL5A1P20908 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC16.74■□□□□ 0.27
COL5A1P20908 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL5A1P20908 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL5A1P20908 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL5A1P20908 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL5A1P20908 AC092919.2-201ENST00000623631 1645 ntBASIC16.74■□□□□ 0.27
COL5A1P20908 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC16.73■□□□□ 0.27
COL5A1P20908 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL5A1P20908 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC16.73■□□□□ 0.27
COL5A1P20908 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.73■□□□□ 0.27
COL5A1P20908 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC16.73■□□□□ 0.27
COL5A1P20908 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.73■□□□□ 0.27
COL5A1P20908 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL5A1P20908 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL5A1P20908 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL5A1P20908 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL5A1P20908 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
COL5A1P20908 AC104581.1-202ENST00000635932 2618 ntBASIC16.73■□□□□ 0.27
COL5A1P20908 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL5A1P20908 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL5A1P20908 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL5A1P20908 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL5A1P20908 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL5A1P20908 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC16.73■□□□□ 0.27
COL5A1P20908 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
COL5A1P20908 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms