Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX3P41225 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.63■□□□□ 0.25
SOX3P41225 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.63■□□□□ 0.25
SOX3P41225 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
SOX3P41225 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX3P41225 TNRC18P3-201ENST00000441896 2691 ntBASIC16.63■□□□□ 0.25
SOX3P41225 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX3P41225 AC108860.2-201ENST00000562760 2183 ntBASIC16.62■□□□□ 0.25
SOX3P41225 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX3P41225 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX3P41225 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC16.62■□□□□ 0.25
SOX3P41225 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX3P41225 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX3P41225 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX3P41225 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX3P41225 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.62■□□□□ 0.25
SOX3P41225 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX3P41225 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SOX3P41225 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
SOX3P41225 PHGDH-209ENST00000641074 1780 ntBASIC16.62■□□□□ 0.25
SOX3P41225 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX3P41225 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SOX3P41225 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX3P41225 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC16.62■□□□□ 0.25
SOX3P41225 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX3P41225 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SOX3P41225 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
SOX3P41225 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SOX3P41225 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.62■□□□□ 0.25
SOX3P41225 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.62■□□□□ 0.25
SOX3P41225 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.62■□□□□ 0.25
SOX3P41225 AP005901.3-202ENST00000581653 237 ntBASIC16.62■□□□□ 0.25
SOX3P41225 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
SOX3P41225 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.62■□□□□ 0.25
SOX3P41225 AC009154.2-201ENST00000621177 724 ntBASIC16.62■□□□□ 0.25
SOX3P41225 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX3P41225 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SOX3P41225 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX3P41225 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.62■□□□□ 0.25
SOX3P41225 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SOX3P41225 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SOX3P41225 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
SOX3P41225 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.62■□□□□ 0.25
SOX3P41225 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SOX3P41225 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX3P41225 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SOX3P41225 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX3P41225 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
SOX3P41225 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX3P41225 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX3P41225 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX3P41225 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX3P41225 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX3P41225 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC16.61■□□□□ 0.25
SOX3P41225 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC16.61■□□□□ 0.25
SOX3P41225 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX3P41225 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.61■□□□□ 0.25
SOX3P41225 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
SOX3P41225 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.61■□□□□ 0.25
SOX3P41225 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC16.61■□□□□ 0.25
SOX3P41225 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX3P41225 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX3P41225 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SOX3P41225 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX3P41225 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX3P41225 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
SOX3P41225 AL450487.1-201ENST00000426799 995 ntBASIC16.61■□□□□ 0.25
SOX3P41225 KRT17P6-201ENST00000453795 1220 ntBASIC16.61■□□□□ 0.25
SOX3P41225 AC068472.1-201ENST00000474589 881 ntBASIC16.61■□□□□ 0.25
SOX3P41225 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.61■□□□□ 0.25
SOX3P41225 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX3P41225 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.61■□□□□ 0.25
SOX3P41225 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.61■□□□□ 0.25
SOX3P41225 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.61■□□□□ 0.25
SOX3P41225 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
SOX3P41225 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
SOX3P41225 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
SOX3P41225 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.61■□□□□ 0.25
SOX3P41225 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC16.61■□□□□ 0.25
SOX3P41225 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX3P41225 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
SOX3P41225 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SOX3P41225 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SOX3P41225 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SOX3P41225 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SOX3P41225 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.6■□□□□ 0.25
SOX3P41225 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SOX3P41225 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SOX3P41225 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
SOX3P41225 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.6■□□□□ 0.25
SOX3P41225 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SOX3P41225 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SOX3P41225 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SOX3P41225 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SOX3P41225 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
SOX3P41225 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.6■□□□□ 0.25
SOX3P41225 AC246785.2-201ENST00000432512 513 ntBASIC16.6■□□□□ 0.25
SOX3P41225 KRT18P65-201ENST00000439811 1286 ntBASIC16.6■□□□□ 0.25
SOX3P41225 NUS1P1-201ENST00000446295 882 ntBASIC16.6■□□□□ 0.25
SOX3P41225 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms