Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC19.78■□□□□ 0.76
MSH4O15457 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC19.78■□□□□ 0.76
MSH4O15457 AC025062.2-201ENST00000605477 670 ntBASIC19.78■□□□□ 0.76
MSH4O15457 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
MSH4O15457 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSH4O15457 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC19.78■□□□□ 0.76
MSH4O15457 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC19.78■□□□□ 0.76
MSH4O15457 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC19.78■□□□□ 0.76
MSH4O15457 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
MSH4O15457 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC19.77■□□□□ 0.76
MSH4O15457 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
MSH4O15457 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
MSH4O15457 MED22-202ENST00000371999 987 ntTSL 3 BASIC19.77■□□□□ 0.76
MSH4O15457 MYCLP1-201ENST00000372451 1075 ntBASIC19.77■□□□□ 0.76
MSH4O15457 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
MSH4O15457 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
MSH4O15457 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC19.77■□□□□ 0.76
MSH4O15457 STK19B-204ENST00000512515 211 ntBASIC19.77■□□□□ 0.76
MSH4O15457 RNA5SP419-201ENST00000515908 135 ntBASIC19.77■□□□□ 0.76
MSH4O15457 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
MSH4O15457 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
MSH4O15457 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
MSH4O15457 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
MSH4O15457 AC009336.1-201ENST00000608941 1553 ntBASIC19.77■□□□□ 0.76
MSH4O15457 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC19.77■□□□□ 0.76
MSH4O15457 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
MSH4O15457 GNAS-203ENST00000306120 1878 ntBASIC19.77■□□□□ 0.76
MSH4O15457 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
MSH4O15457 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
MSH4O15457 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.75
MSH4O15457 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC19.76■□□□□ 0.75
MSH4O15457 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
MSH4O15457 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
MSH4O15457 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
MSH4O15457 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
MSH4O15457 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSH4O15457 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.76■□□□□ 0.75
MSH4O15457 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSH4O15457 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC19.76■□□□□ 0.75
MSH4O15457 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSH4O15457 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSH4O15457 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSH4O15457 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSH4O15457 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
MSH4O15457 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC19.76■□□□□ 0.75
MSH4O15457 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
MSH4O15457 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
MSH4O15457 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSH4O15457 MTDHP4-201ENST00000600287 670 ntBASIC19.76■□□□□ 0.75
MSH4O15457 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSH4O15457 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSH4O15457 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSH4O15457 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC19.76■□□□□ 0.75
MSH4O15457 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
MSH4O15457 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC19.76■□□□□ 0.75
MSH4O15457 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSH4O15457 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC19.76■□□□□ 0.75
MSH4O15457 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
MSH4O15457 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC19.76■□□□□ 0.75
MSH4O15457 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH4O15457 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
MSH4O15457 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH4O15457 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
MSH4O15457 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
MSH4O15457 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH4O15457 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
MSH4O15457 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
MSH4O15457 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
MSH4O15457 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH4O15457 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC19.75■□□□□ 0.75
MSH4O15457 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
MSH4O15457 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH4O15457 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC19.75■□□□□ 0.75
MSH4O15457 PRYP5-201ENST00000451909 266 ntBASIC19.75■□□□□ 0.75
MSH4O15457 AF186996.4-201ENST00000467186 377 ntBASIC19.75■□□□□ 0.75
MSH4O15457 AC073648.2-201ENST00000510116 352 ntBASIC19.75■□□□□ 0.75
MSH4O15457 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC19.75■□□□□ 0.75
MSH4O15457 CYB561-217ENST00000582997 877 ntTSL 5 BASIC19.75■□□□□ 0.75
MSH4O15457 AL139327.4-201ENST00000612362 153 ntBASIC19.75■□□□□ 0.75
MSH4O15457 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC19.75■□□□□ 0.75
MSH4O15457 AL022326.1-202ENST00000641533 845 ntBASIC19.75■□□□□ 0.75
MSH4O15457 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH4O15457 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH4O15457 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH4O15457 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH4O15457 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
MSH4O15457 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH4O15457 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH4O15457 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
MSH4O15457 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
MSH4O15457 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH4O15457 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
MSH4O15457 HLA-A-201ENST00000376802 1334 ntBASIC19.75■□□□□ 0.75
MSH4O15457 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH4O15457 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC19.74■□□□□ 0.75
MSH4O15457 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC19.74■□□□□ 0.75
MSH4O15457 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH4O15457 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC19.74■□□□□ 0.75
MSH4O15457 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH4O15457 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms