Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 AL024508.2-201ENST00000607749 1894 ntBASIC12.94□□□□□ -0.34
SMKR1H3BMG3 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 AC239809.2-201ENST00000415381 517 ntBASIC12.94□□□□□ -0.34
SMKR1H3BMG3 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
SMKR1H3BMG3 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 FLJ16779-201ENST00000612722 7638 ntBASIC12.93□□□□□ -0.34
SMKR1H3BMG3 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 AC132938.6-201ENST00000623828 1655 ntBASIC12.93□□□□□ -0.34
SMKR1H3BMG3 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 AL603756.1-201ENST00000606511 2163 ntBASIC12.93□□□□□ -0.34
SMKR1H3BMG3 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 KIRREL3-AS3-201ENST00000404882 831 ntBASIC12.93□□□□□ -0.34
SMKR1H3BMG3 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 AP002982.1-201ENST00000492365 877 ntBASIC12.93□□□□□ -0.34
SMKR1H3BMG3 PPP1R14BP3-201ENST00000509033 445 ntBASIC12.93□□□□□ -0.34
SMKR1H3BMG3 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 AC069544.1-201ENST00000609399 999 ntBASIC12.93□□□□□ -0.34
SMKR1H3BMG3 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC12.93□□□□□ -0.34
SMKR1H3BMG3 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC12.93□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms