Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC21.27■□□□□ 0.99
ZC3H4Q9UPT8 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ZC3H4Q9UPT8 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ZC3H4Q9UPT8 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ZC3H4Q9UPT8 FUT8-AS1-201ENST00000621019 1521 ntBASIC21.26■□□□□ 0.99
ZC3H4Q9UPT8 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC21.26■□□□□ 0.99
ZC3H4Q9UPT8 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC21.26■□□□□ 0.99
ZC3H4Q9UPT8 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
ZC3H4Q9UPT8 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
ZC3H4Q9UPT8 TUBB3P1-201ENST00000405796 1332 ntBASIC21.26■□□□□ 0.99
ZC3H4Q9UPT8 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
ZC3H4Q9UPT8 AL355306.1-201ENST00000415580 579 ntBASIC21.26■□□□□ 0.99
ZC3H4Q9UPT8 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
ZC3H4Q9UPT8 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC21.26■□□□□ 0.99
ZC3H4Q9UPT8 AC107890.1-201ENST00000422478 521 ntBASIC21.26■□□□□ 0.99
ZC3H4Q9UPT8 UGT1A2P-201ENST00000454886 866 ntBASIC21.26■□□□□ 0.99
ZC3H4Q9UPT8 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
ZC3H4Q9UPT8 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ZC3H4Q9UPT8 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC21.26■□□□□ 0.99
ZC3H4Q9UPT8 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC21.26■□□□□ 0.99
ZC3H4Q9UPT8 AC132938.6-201ENST00000623828 1655 ntBASIC21.26■□□□□ 0.99
ZC3H4Q9UPT8 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 RPL30-202ENST00000396070 440 ntTSL 2 BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 TSFM-210ENST00000550559 897 ntTSL 5 BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 BSG-214ENST00000614867 960 ntTSL 3 BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ZC3H4Q9UPT8 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
ZC3H4Q9UPT8 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC21.24■□□□□ 0.99
ZC3H4Q9UPT8 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ZC3H4Q9UPT8 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ZC3H4Q9UPT8 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
ZC3H4Q9UPT8 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC21.24■□□□□ 0.99
ZC3H4Q9UPT8 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ZC3H4Q9UPT8 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ZC3H4Q9UPT8 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC21.24■□□□□ 0.99
ZC3H4Q9UPT8 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ZC3H4Q9UPT8 CENPM-205ENST00000404067 905 ntTSL 3 BASIC21.24■□□□□ 0.99
ZC3H4Q9UPT8 AC022494.1-201ENST00000466044 728 ntBASIC21.24■□□□□ 0.99
ZC3H4Q9UPT8 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
ZC3H4Q9UPT8 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC21.24■□□□□ 0.99
ZC3H4Q9UPT8 AC140878.1-201ENST00000565277 250 ntBASIC21.24■□□□□ 0.99
ZC3H4Q9UPT8 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC21.24■□□□□ 0.99
ZC3H4Q9UPT8 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ZC3H4Q9UPT8 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.24■□□□□ 0.99
ZC3H4Q9UPT8 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
ZC3H4Q9UPT8 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
ZC3H4Q9UPT8 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC21.23■□□□□ 0.99
ZC3H4Q9UPT8 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
ZC3H4Q9UPT8 SNAI3-AS1-205ENST00000568633 2096 ntBASIC21.23■□□□□ 0.99
ZC3H4Q9UPT8 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
ZC3H4Q9UPT8 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
ZC3H4Q9UPT8 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
ZC3H4Q9UPT8 AC092919.2-201ENST00000623631 1645 ntBASIC21.23■□□□□ 0.99
ZC3H4Q9UPT8 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
ZC3H4Q9UPT8 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
ZC3H4Q9UPT8 AC005237.2-201ENST00000434368 219 ntBASIC21.23■□□□□ 0.99
ZC3H4Q9UPT8 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC21.23■□□□□ 0.99
ZC3H4Q9UPT8 RN7SL589P-201ENST00000481268 310 ntBASIC21.23■□□□□ 0.99
ZC3H4Q9UPT8 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC21.23■□□□□ 0.99
ZC3H4Q9UPT8 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
ZC3H4Q9UPT8 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC21.23■□□□□ 0.99
ZC3H4Q9UPT8 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC21.23■□□□□ 0.99
ZC3H4Q9UPT8 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC21.23■□□□□ 0.99
ZC3H4Q9UPT8 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ZC3H4Q9UPT8 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
ZC3H4Q9UPT8 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
ZC3H4Q9UPT8 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC21.22■□□□□ 0.99
ZC3H4Q9UPT8 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ZC3H4Q9UPT8 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
ZC3H4Q9UPT8 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ZC3H4Q9UPT8 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms