Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 AL390719.2-201ENST00000606993 987 ntBASIC14.28□□□□□ -0.12
CX3CL1P78423 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CX3CL1P78423 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC14.28□□□□□ -0.12
CX3CL1P78423 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
CX3CL1P78423 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
CX3CL1P78423 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
CX3CL1P78423 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CX3CL1P78423 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CX3CL1P78423 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC14.28□□□□□ -0.12
CX3CL1P78423 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
CX3CL1P78423 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
CX3CL1P78423 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CX3CL1P78423 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CX3CL1P78423 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
CX3CL1P78423 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CX3CL1P78423 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
CX3CL1P78423 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.12
CX3CL1P78423 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC14.27□□□□□ -0.12
CX3CL1P78423 KRT18P55-202ENST00000578578 1546 ntBASIC14.27□□□□□ -0.12
CX3CL1P78423 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
CX3CL1P78423 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CX3CL1P78423 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
CX3CL1P78423 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
CX3CL1P78423 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CX3CL1P78423 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CX3CL1P78423 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CX3CL1P78423 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CX3CL1P78423 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CX3CL1P78423 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC14.27□□□□□ -0.13
CX3CL1P78423 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC14.27□□□□□ -0.13
CX3CL1P78423 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC14.27□□□□□ -0.13
CX3CL1P78423 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC14.27□□□□□ -0.13
CX3CL1P78423 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC14.27□□□□□ -0.13
CX3CL1P78423 RMI2-205ENST00000576027 818 ntTSL 2 BASIC14.27□□□□□ -0.13
CX3CL1P78423 AC011498.5-201ENST00000592027 486 ntBASIC14.27□□□□□ -0.13
CX3CL1P78423 NDUFV2-AS1-203ENST00000608008 779 ntBASIC14.27□□□□□ -0.13
CX3CL1P78423 AC009154.2-201ENST00000621177 724 ntBASIC14.27□□□□□ -0.13
CX3CL1P78423 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
CX3CL1P78423 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CX3CL1P78423 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CX3CL1P78423 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
CX3CL1P78423 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC14.27□□□□□ -0.13
CX3CL1P78423 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC14.27□□□□□ -0.13
CX3CL1P78423 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC14.27□□□□□ -0.13
CX3CL1P78423 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CX3CL1P78423 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC14.27□□□□□ -0.13
CX3CL1P78423 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC14.27□□□□□ -0.13
CX3CL1P78423 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC14.27□□□□□ -0.13
CX3CL1P78423 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CX3CL1P78423 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CX3CL1P78423 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.13
CX3CL1P78423 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CX3CL1P78423 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC14.26□□□□□ -0.13
CX3CL1P78423 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CX3CL1P78423 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CX3CL1P78423 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC14.26□□□□□ -0.13
CX3CL1P78423 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CX3CL1P78423 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CX3CL1P78423 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CX3CL1P78423 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CX3CL1P78423 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CX3CL1P78423 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CX3CL1P78423 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CX3CL1P78423 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CX3CL1P78423 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CX3CL1P78423 MIR1224-201ENST00000408193 85 ntBASIC14.26□□□□□ -0.13
CX3CL1P78423 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC14.26□□□□□ -0.13
CX3CL1P78423 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CX3CL1P78423 TSPY22P-201ENST00000427496 604 ntBASIC14.26□□□□□ -0.13
CX3CL1P78423 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
CX3CL1P78423 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC14.26□□□□□ -0.13
CX3CL1P78423 FAM86EP-206ENST00000510506 987 ntBASIC14.26□□□□□ -0.13
CX3CL1P78423 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CX3CL1P78423 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC14.26□□□□□ -0.13
CX3CL1P78423 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
CX3CL1P78423 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC14.26□□□□□ -0.13
CX3CL1P78423 ANKRD20A8P-203ENST00000641373 517 ntBASIC14.26□□□□□ -0.13
CX3CL1P78423 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC14.26□□□□□ -0.13
CX3CL1P78423 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC14.26□□□□□ -0.13
CX3CL1P78423 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CX3CL1P78423 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CX3CL1P78423 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CX3CL1P78423 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CX3CL1P78423 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC14.26□□□□□ -0.13
CX3CL1P78423 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC14.26□□□□□ -0.13
CX3CL1P78423 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CX3CL1P78423 HLA-DQB1-201ENST00000374943 1656 ntBASIC14.26□□□□□ -0.13
CX3CL1P78423 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CX3CL1P78423 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC14.26□□□□□ -0.13
CX3CL1P78423 GNE-204ENST00000539208 2190 ntTSL 2 BASIC14.26□□□□□ -0.13
CX3CL1P78423 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CX3CL1P78423 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CX3CL1P78423 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CX3CL1P78423 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
CX3CL1P78423 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CX3CL1P78423 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CX3CL1P78423 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CX3CL1P78423 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC14.25□□□□□ -0.13
CX3CL1P78423 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CX3CL1P78423 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms