Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PRKNO60260 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
PRKNO60260 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PRKNO60260 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.46■□□□□ 0.23
PRKNO60260 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.46■□□□□ 0.23
PRKNO60260 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.46■□□□□ 0.23
PRKNO60260 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PRKNO60260 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
PRKNO60260 SIRPAP1-201ENST00000448467 1770 ntBASIC16.46■□□□□ 0.22
PRKNO60260 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
PRKNO60260 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
PRKNO60260 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PRKNO60260 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
PRKNO60260 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
PRKNO60260 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PRKNO60260 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
PRKNO60260 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PRKNO60260 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PRKNO60260 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PRKNO60260 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PRKNO60260 AC090340.1-201ENST00000620778 4980 ntBASIC16.45■□□□□ 0.22
PRKNO60260 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PRKNO60260 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
PRKNO60260 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
PRKNO60260 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PRKNO60260 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
PRKNO60260 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.45■□□□□ 0.22
PRKNO60260 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC16.45■□□□□ 0.22
PRKNO60260 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC16.45■□□□□ 0.22
PRKNO60260 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PRKNO60260 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.45■□□□□ 0.22
PRKNO60260 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC16.45■□□□□ 0.22
PRKNO60260 AF238378.1-201ENST00000526806 358 ntBASIC16.45■□□□□ 0.22
PRKNO60260 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC16.45■□□□□ 0.22
PRKNO60260 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.45■□□□□ 0.22
PRKNO60260 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.45■□□□□ 0.22
PRKNO60260 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.45■□□□□ 0.22
PRKNO60260 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.45■□□□□ 0.22
PRKNO60260 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PRKNO60260 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.45■□□□□ 0.22
PRKNO60260 AL031008.1-201ENST00000619963 541 ntBASIC16.45■□□□□ 0.22
PRKNO60260 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.45■□□□□ 0.22
PRKNO60260 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.45■□□□□ 0.22
PRKNO60260 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
PRKNO60260 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PRKNO60260 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.45■□□□□ 0.22
PRKNO60260 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.45■□□□□ 0.22
PRKNO60260 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.45■□□□□ 0.22
PRKNO60260 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PRKNO60260 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
PRKNO60260 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
PRKNO60260 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PRKNO60260 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
PRKNO60260 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
PRKNO60260 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
PRKNO60260 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PRKNO60260 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PRKNO60260 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC16.45■□□□□ 0.22
PRKNO60260 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PRKNO60260 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
PRKNO60260 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PRKNO60260 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
PRKNO60260 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.45■□□□□ 0.22
PRKNO60260 BCL2-203ENST00000589955 5011 ntBASIC16.44■□□□□ 0.22
PRKNO60260 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
PRKNO60260 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PRKNO60260 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.44■□□□□ 0.22
PRKNO60260 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PRKNO60260 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.44■□□□□ 0.22
PRKNO60260 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.44■□□□□ 0.22
PRKNO60260 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
PRKNO60260 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
PRKNO60260 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PRKNO60260 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PRKNO60260 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PRKNO60260 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.44■□□□□ 0.22
PRKNO60260 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PRKNO60260 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
PRKNO60260 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PRKNO60260 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.44■□□□□ 0.22
PRKNO60260 MNT-208ENST00000575394 606 ntTSL 4 BASIC16.44■□□□□ 0.22
PRKNO60260 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.44■□□□□ 0.22
PRKNO60260 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
PRKNO60260 LINC01711-201ENST00000598340 967 ntBASIC16.44■□□□□ 0.22
PRKNO60260 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.44■□□□□ 0.22
PRKNO60260 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.44■□□□□ 0.22
PRKNO60260 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.44■□□□□ 0.22
PRKNO60260 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
PRKNO60260 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
PRKNO60260 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PRKNO60260 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC16.44■□□□□ 0.22
PRKNO60260 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC16.44■□□□□ 0.22
PRKNO60260 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PRKNO60260 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.44■□□□□ 0.22
PRKNO60260 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
PRKNO60260 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC16.44■□□□□ 0.22
PRKNO60260 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PRKNO60260 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
PRKNO60260 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PRKNO60260 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms