Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
SIX2Q9NPC8 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 AC116353.5-201ENST00000638148 1699 ntBASIC18.95■□□□□ 0.62
SIX2Q9NPC8 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 AC016396.2-201ENST00000562575 1417 ntBASIC18.95■□□□□ 0.62
SIX2Q9NPC8 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SIX2Q9NPC8 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.94■□□□□ 0.62
SIX2Q9NPC8 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
SIX2Q9NPC8 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SIX2Q9NPC8 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SIX2Q9NPC8 AL049757.1-201ENST00000616842 1596 ntBASIC18.94■□□□□ 0.62
SIX2Q9NPC8 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SIX2Q9NPC8 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SIX2Q9NPC8 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC18.94■□□□□ 0.62
SIX2Q9NPC8 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC18.94■□□□□ 0.62
SIX2Q9NPC8 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
SIX2Q9NPC8 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SIX2Q9NPC8 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SIX2Q9NPC8 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SIX2Q9NPC8 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SIX2Q9NPC8 CHCHD2P8-201ENST00000429873 447 ntBASIC18.94■□□□□ 0.62
SIX2Q9NPC8 AP002383.4-201ENST00000442518 975 ntBASIC18.94■□□□□ 0.62
SIX2Q9NPC8 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SIX2Q9NPC8 AC122714.2-201ENST00000502787 707 ntBASIC18.94■□□□□ 0.62
SIX2Q9NPC8 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.94■□□□□ 0.62
SIX2Q9NPC8 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.94■□□□□ 0.62
SIX2Q9NPC8 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SIX2Q9NPC8 AC109462.3-201ENST00000573934 613 ntBASIC18.94■□□□□ 0.62
SIX2Q9NPC8 AC011840.4-201ENST00000578471 627 ntBASIC18.94■□□□□ 0.62
SIX2Q9NPC8 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SIX2Q9NPC8 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.94■□□□□ 0.62
SIX2Q9NPC8 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
SIX2Q9NPC8 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SIX2Q9NPC8 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
SIX2Q9NPC8 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.94■□□□□ 0.62
SIX2Q9NPC8 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SIX2Q9NPC8 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
SIX2Q9NPC8 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
SIX2Q9NPC8 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.94■□□□□ 0.62
SIX2Q9NPC8 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SIX2Q9NPC8 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms