Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 AP005901.3-202ENST00000581653 237 ntBASIC16.41■□□□□ 0.22
UBQLN3Q9H347 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 Z69720.1-201ENST00000601483 472 ntBASIC16.41■□□□□ 0.22
UBQLN3Q9H347 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 AC009154.2-201ENST00000621177 724 ntBASIC16.41■□□□□ 0.22
UBQLN3Q9H347 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 PP12613-201ENST00000424958 2230 ntBASIC16.41■□□□□ 0.22
UBQLN3Q9H347 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
UBQLN3Q9H347 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 IGHV3-47-201ENST00000425060 335 ntBASIC16.4■□□□□ 0.22
UBQLN3Q9H347 AL450487.1-201ENST00000426799 995 ntBASIC16.4■□□□□ 0.22
UBQLN3Q9H347 AC068472.1-201ENST00000474589 881 ntBASIC16.4■□□□□ 0.22
UBQLN3Q9H347 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 OR6D1P-202ENST00000641007 5290 ntBASIC16.4■□□□□ 0.22
UBQLN3Q9H347 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
UBQLN3Q9H347 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.22
UBQLN3Q9H347 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.39■□□□□ 0.22
UBQLN3Q9H347 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
UBQLN3Q9H347 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.39■□□□□ 0.21
UBQLN3Q9H347 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
UBQLN3Q9H347 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
UBQLN3Q9H347 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.39■□□□□ 0.21
UBQLN3Q9H347 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
UBQLN3Q9H347 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
UBQLN3Q9H347 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
UBQLN3Q9H347 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
UBQLN3Q9H347 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
UBQLN3Q9H347 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
UBQLN3Q9H347 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
UBQLN3Q9H347 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
UBQLN3Q9H347 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
UBQLN3Q9H347 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
UBQLN3Q9H347 KRT18P65-201ENST00000439811 1286 ntBASIC16.39■□□□□ 0.21
UBQLN3Q9H347 KRT17P6-201ENST00000453795 1220 ntBASIC16.39■□□□□ 0.21
UBQLN3Q9H347 VENTXP7-201ENST00000475503 772 ntBASIC16.39■□□□□ 0.21
UBQLN3Q9H347 AC091607.1-201ENST00000490318 1060 ntBASIC16.39■□□□□ 0.21
UBQLN3Q9H347 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.39■□□□□ 0.21
UBQLN3Q9H347 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.39■□□□□ 0.21
UBQLN3Q9H347 PRELID1P1-202ENST00000567272 903 ntBASIC16.39■□□□□ 0.21
UBQLN3Q9H347 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
UBQLN3Q9H347 AC011840.4-201ENST00000578471 627 ntBASIC16.39■□□□□ 0.21
UBQLN3Q9H347 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.39■□□□□ 0.21
UBQLN3Q9H347 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
UBQLN3Q9H347 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
UBQLN3Q9H347 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.39■□□□□ 0.21
UBQLN3Q9H347 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
UBQLN3Q9H347 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms