Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC4P56524 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC4P56524 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC4P56524 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC4P56524 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.5■□□□□ 0.55
HDAC4P56524 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC4P56524 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.5■□□□□ 0.55
HDAC4P56524 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC4P56524 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
HDAC4P56524 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC4P56524 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC4P56524 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
HDAC4P56524 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.5■□□□□ 0.55
HDAC4P56524 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.5■□□□□ 0.55
HDAC4P56524 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC18.5■□□□□ 0.55
HDAC4P56524 CIB2-208ENST00000560618 804 ntTSL 2 BASIC18.5■□□□□ 0.55
HDAC4P56524 MPI-205ENST00000562606 1052 ntTSL 3 BASIC18.5■□□□□ 0.55
HDAC4P56524 BCL10-202ENST00000620248 774 ntTSL 5 BASIC18.5■□□□□ 0.55
HDAC4P56524 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
HDAC4P56524 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
HDAC4P56524 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC4P56524 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18.5■□□□□ 0.55
HDAC4P56524 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.5■□□□□ 0.55
HDAC4P56524 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC4P56524 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC4P56524 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC4P56524 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC4P56524 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC4P56524 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC4P56524 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
HDAC4P56524 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC4P56524 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HDAC4P56524 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
HDAC4P56524 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HDAC4P56524 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
HDAC4P56524 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.49■□□□□ 0.55
HDAC4P56524 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
HDAC4P56524 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HDAC4P56524 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
HDAC4P56524 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
HDAC4P56524 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.49■□□□□ 0.55
HDAC4P56524 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HDAC4P56524 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
HDAC4P56524 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC18.49■□□□□ 0.55
HDAC4P56524 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
HDAC4P56524 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HDAC4P56524 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HDAC4P56524 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC18.49■□□□□ 0.55
HDAC4P56524 AC233702.3-201ENST00000578656 1387 ntBASIC18.49■□□□□ 0.55
HDAC4P56524 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
HDAC4P56524 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.49■□□□□ 0.55
HDAC4P56524 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HDAC4P56524 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HDAC4P56524 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.49■□□□□ 0.55
HDAC4P56524 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
HDAC4P56524 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.49■□□□□ 0.55
HDAC4P56524 TBC1D3P5-201ENST00000579401 1545 ntBASIC18.49■□□□□ 0.55
HDAC4P56524 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HDAC4P56524 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HDAC4P56524 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HDAC4P56524 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HDAC4P56524 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.48■□□□□ 0.55
HDAC4P56524 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HDAC4P56524 AC133963.1-201ENST00000504166 1679 ntBASIC18.48■□□□□ 0.55
HDAC4P56524 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
HDAC4P56524 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.48■□□□□ 0.55
HDAC4P56524 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HDAC4P56524 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
HDAC4P56524 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HDAC4P56524 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HDAC4P56524 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
HDAC4P56524 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
HDAC4P56524 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HDAC4P56524 ATP5G2P1-201ENST00000433580 426 ntBASIC18.48■□□□□ 0.55
HDAC4P56524 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.48■□□□□ 0.55
HDAC4P56524 TOB2P1-201ENST00000469761 992 ntBASIC18.48■□□□□ 0.55
HDAC4P56524 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC18.48■□□□□ 0.55
HDAC4P56524 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC18.48■□□□□ 0.55
HDAC4P56524 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HDAC4P56524 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC18.48■□□□□ 0.55
HDAC4P56524 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.48■□□□□ 0.55
HDAC4P56524 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC18.48■□□□□ 0.55
HDAC4P56524 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HDAC4P56524 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
HDAC4P56524 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HDAC4P56524 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
HDAC4P56524 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.48■□□□□ 0.55
HDAC4P56524 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.48■□□□□ 0.55
HDAC4P56524 BX276092.7-203ENST00000637198 1536 ntBASIC18.48■□□□□ 0.55
HDAC4P56524 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
HDAC4P56524 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.48■□□□□ 0.55
HDAC4P56524 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.48■□□□□ 0.55
HDAC4P56524 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HDAC4P56524 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
HDAC4P56524 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HDAC4P56524 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.47■□□□□ 0.55
HDAC4P56524 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
HDAC4P56524 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HDAC4P56524 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
HDAC4P56524 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms