Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC16.67■□□□□ 0.26
RFX3P48380 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RFX3P48380 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
RFX3P48380 UBC-206ENST00000538617 1303 ntTSL 5 BASIC16.67■□□□□ 0.26
RFX3P48380 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RFX3P48380 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
RFX3P48380 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
RFX3P48380 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.66■□□□□ 0.26
RFX3P48380 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
RFX3P48380 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RFX3P48380 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
RFX3P48380 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RFX3P48380 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.66■□□□□ 0.26
RFX3P48380 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RFX3P48380 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
RFX3P48380 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.66■□□□□ 0.26
RFX3P48380 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC16.66■□□□□ 0.26
RFX3P48380 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
RFX3P48380 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
RFX3P48380 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
RFX3P48380 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RFX3P48380 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RFX3P48380 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
RFX3P48380 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
RFX3P48380 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RFX3P48380 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
RFX3P48380 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
RFX3P48380 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RFX3P48380 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC16.66■□□□□ 0.26
RFX3P48380 IGHGP-201ENST00000390555 1178 ntBASIC16.66■□□□□ 0.26
RFX3P48380 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RFX3P48380 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC16.66■□□□□ 0.26
RFX3P48380 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
RFX3P48380 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC16.66■□□□□ 0.26
RFX3P48380 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC16.66■□□□□ 0.26
RFX3P48380 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
RFX3P48380 SPDYE13P-201ENST00000445314 798 ntBASIC16.66■□□□□ 0.26
RFX3P48380 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
RFX3P48380 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC16.66■□□□□ 0.26
RFX3P48380 AC113404.2-201ENST00000507884 177 ntBASIC16.66■□□□□ 0.26
RFX3P48380 PRORSD1P-202ENST00000563365 2154 ntBASIC16.66■□□□□ 0.26
RFX3P48380 RNF126P1-202ENST00000569893 925 ntBASIC16.66■□□□□ 0.26
RFX3P48380 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RFX3P48380 GPR32P1-201ENST00000601788 811 ntBASIC16.66■□□□□ 0.26
RFX3P48380 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RFX3P48380 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
RFX3P48380 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
RFX3P48380 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
RFX3P48380 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
RFX3P48380 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RFX3P48380 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
RFX3P48380 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
RFX3P48380 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
RFX3P48380 KRT89P-201ENST00000620027 1478 ntBASIC16.66■□□□□ 0.26
RFX3P48380 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.66■□□□□ 0.26
RFX3P48380 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC16.66■□□□□ 0.26
RFX3P48380 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
RFX3P48380 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
RFX3P48380 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC16.65■□□□□ 0.26
RFX3P48380 AL353692.3-201ENST00000407031 1396 ntBASIC16.65■□□□□ 0.26
RFX3P48380 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
RFX3P48380 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX3P48380 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX3P48380 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX3P48380 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
RFX3P48380 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX3P48380 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX3P48380 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX3P48380 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX3P48380 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC16.65■□□□□ 0.26
RFX3P48380 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
RFX3P48380 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
RFX3P48380 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX3P48380 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX3P48380 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX3P48380 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX3P48380 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX3P48380 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC16.65■□□□□ 0.26
RFX3P48380 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX3P48380 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC16.65■□□□□ 0.26
RFX3P48380 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC16.65■□□□□ 0.26
RFX3P48380 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC16.65■□□□□ 0.26
RFX3P48380 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC16.65■□□□□ 0.26
RFX3P48380 MNT-208ENST00000575394 606 ntTSL 4 BASIC16.65■□□□□ 0.26
RFX3P48380 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC16.65■□□□□ 0.26
RFX3P48380 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.65■□□□□ 0.26
RFX3P48380 NDUFV2-AS1-203ENST00000608008 779 ntBASIC16.65■□□□□ 0.26
RFX3P48380 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX3P48380 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
RFX3P48380 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX3P48380 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.65■□□□□ 0.26
RFX3P48380 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX3P48380 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX3P48380 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
RFX3P48380 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC16.65■□□□□ 0.26
RFX3P48380 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
RFX3P48380 AC022898.2-201ENST00000616822 1312 ntBASIC16.65■□□□□ 0.26
RFX3P48380 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
RFX3P48380 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
RFX3P48380 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC16.64■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms