Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1BO60663 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1BO60663 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1BO60663 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1BO60663 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1BO60663 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1BO60663 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1BO60663 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC15.59■□□□□ 0.09
LMX1BO60663 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC15.59■□□□□ 0.09
LMX1BO60663 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC15.59■□□□□ 0.09
LMX1BO60663 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC15.59■□□□□ 0.09
LMX1BO60663 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC15.59■□□□□ 0.09
LMX1BO60663 MIR3917-201ENST00000580971 93 ntBASIC15.59■□□□□ 0.09
LMX1BO60663 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC15.59■□□□□ 0.09
LMX1BO60663 KLK8-205ENST00000593490 267 ntTSL 3 BASIC15.59■□□□□ 0.09
LMX1BO60663 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1BO60663 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC15.59■□□□□ 0.09
LMX1BO60663 AL157888.1-201ENST00000631930 593 ntBASIC15.59■□□□□ 0.09
LMX1BO60663 LINC00602-201ENST00000629776 2065 ntBASIC15.59■□□□□ 0.09
LMX1BO60663 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1BO60663 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
LMX1BO60663 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1BO60663 AC022211.2-201ENST00000585075 2527 ntBASIC15.59■□□□□ 0.09
LMX1BO60663 BOC-212ENST00000485230 2173 ntTSL 2 BASIC15.59■□□□□ 0.09
LMX1BO60663 NF2-208ENST00000403435 2568 ntTSL 5 BASIC15.59■□□□□ 0.09
LMX1BO60663 BCL2-203ENST00000589955 5011 ntBASIC15.59■□□□□ 0.09
LMX1BO60663 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC15.59■□□□□ 0.09
LMX1BO60663 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC15.59■□□□□ 0.09
LMX1BO60663 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1BO60663 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC15.59■□□□□ 0.09
LMX1BO60663 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC15.59■□□□□ 0.09
LMX1BO60663 PBK-203ENST00000522944 1499 ntTSL 2 BASIC15.59■□□□□ 0.09
LMX1BO60663 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1BO60663 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
LMX1BO60663 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.09
LMX1BO60663 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
LMX1BO60663 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
LMX1BO60663 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
LMX1BO60663 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
LMX1BO60663 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.09
LMX1BO60663 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
LMX1BO60663 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC15.58■□□□□ 0.09
LMX1BO60663 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
LMX1BO60663 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
LMX1BO60663 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
LMX1BO60663 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC15.58■□□□□ 0.09
LMX1BO60663 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1BO60663 PRORSD1P-202ENST00000563365 2154 ntBASIC15.58■□□□□ 0.08
LMX1BO60663 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1BO60663 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1BO60663 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1BO60663 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1BO60663 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1BO60663 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1BO60663 AC004870.1-201ENST00000315132 882 ntBASIC15.58■□□□□ 0.08
LMX1BO60663 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1BO60663 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC15.58■□□□□ 0.08
LMX1BO60663 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1BO60663 BX276092.5-203ENST00000456199 560 ntBASIC15.58■□□□□ 0.08
LMX1BO60663 RASA4DP-201ENST00000460726 1199 ntBASIC15.58■□□□□ 0.08
LMX1BO60663 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC15.58■□□□□ 0.08
LMX1BO60663 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1BO60663 AC111152.3-201ENST00000569699 673 ntBASIC15.58■□□□□ 0.08
LMX1BO60663 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1BO60663 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1BO60663 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1BO60663 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1BO60663 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
LMX1BO60663 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1BO60663 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC15.58■□□□□ 0.08
LMX1BO60663 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
LMX1BO60663 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC15.58■□□□□ 0.08
LMX1BO60663 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC15.58■□□□□ 0.08
LMX1BO60663 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1BO60663 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1BO60663 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1BO60663 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1BO60663 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
LMX1BO60663 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1BO60663 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
LMX1BO60663 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1BO60663 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC15.57■□□□□ 0.08
LMX1BO60663 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1BO60663 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
LMX1BO60663 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1BO60663 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
LMX1BO60663 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC15.57■□□□□ 0.08
LMX1BO60663 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
LMX1BO60663 SPDYE13P-201ENST00000445314 798 ntBASIC15.57■□□□□ 0.08
LMX1BO60663 TSSC2-201ENST00000450217 709 ntBASIC15.57■□□□□ 0.08
LMX1BO60663 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC15.57■□□□□ 0.08
LMX1BO60663 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC15.57■□□□□ 0.08
LMX1BO60663 RN7SL510P-201ENST00000581311 263 ntBASIC15.57■□□□□ 0.08
LMX1BO60663 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC15.57■□□□□ 0.08
LMX1BO60663 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC15.57■□□□□ 0.08
LMX1BO60663 AL121672.3-201ENST00000608644 468 ntBASIC15.57■□□□□ 0.08
LMX1BO60663 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1BO60663 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1BO60663 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC15.57■□□□□ 0.08
LMX1BO60663 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms