Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 NKTR-203ENST00000442970 646 ntTSL 2 BASIC19.84■□□□□ 0.77
MSH4O15457 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
MSH4O15457 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC19.84■□□□□ 0.77
MSH4O15457 IRF8-202ENST00000562492 946 ntTSL 3 BASIC19.84■□□□□ 0.77
MSH4O15457 PAM16-208ENST00000573553 722 ntTSL 2 BASIC19.84■□□□□ 0.77
MSH4O15457 STK25P1-201ENST00000585406 838 ntBASIC19.84■□□□□ 0.77
MSH4O15457 NKAPP1-205ENST00000585790 367 ntBASIC19.84■□□□□ 0.77
MSH4O15457 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC19.84■□□□□ 0.77
MSH4O15457 AC073592.4-201ENST00000623827 446 ntBASIC19.84■□□□□ 0.77
MSH4O15457 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
MSH4O15457 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
MSH4O15457 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
MSH4O15457 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC19.84■□□□□ 0.77
MSH4O15457 AL356309.3-201ENST00000624132 1934 ntBASIC19.84■□□□□ 0.77
MSH4O15457 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
MSH4O15457 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH4O15457 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
MSH4O15457 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH4O15457 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC19.84■□□□□ 0.77
MSH4O15457 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MSH4O15457 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.83■□□□□ 0.77
MSH4O15457 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
MSH4O15457 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
MSH4O15457 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC19.83■□□□□ 0.77
MSH4O15457 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC19.83■□□□□ 0.77
MSH4O15457 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
MSH4O15457 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
MSH4O15457 MRPL3P1-201ENST00000400109 1033 ntBASIC19.83■□□□□ 0.77
MSH4O15457 SPDYE21P-201ENST00000413323 827 ntBASIC19.83■□□□□ 0.77
MSH4O15457 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
MSH4O15457 FAM197Y8-203ENST00000450145 560 ntBASIC19.83■□□□□ 0.77
MSH4O15457 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC19.83■□□□□ 0.77
MSH4O15457 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC19.83■□□□□ 0.77
MSH4O15457 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC19.83■□□□□ 0.77
MSH4O15457 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
MSH4O15457 LINC01451-201ENST00000623792 534 ntBASIC19.83■□□□□ 0.77
MSH4O15457 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
MSH4O15457 AC067852.2-201ENST00000590513 2313 ntBASIC19.83■□□□□ 0.76
MSH4O15457 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
MSH4O15457 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
MSH4O15457 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
MSH4O15457 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
MSH4O15457 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
MSH4O15457 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
MSH4O15457 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
MSH4O15457 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
MSH4O15457 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
MSH4O15457 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSH4O15457 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSH4O15457 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
MSH4O15457 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSH4O15457 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
MSH4O15457 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
MSH4O15457 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
MSH4O15457 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSH4O15457 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
MSH4O15457 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSH4O15457 FDX1P1-201ENST00000449115 551 ntBASIC19.82■□□□□ 0.76
MSH4O15457 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
MSH4O15457 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
MSH4O15457 IGHV3-52-201ENST00000519770 353 ntBASIC19.82■□□□□ 0.76
MSH4O15457 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC19.82■□□□□ 0.76
MSH4O15457 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSH4O15457 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC19.82■□□□□ 0.76
MSH4O15457 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
MSH4O15457 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
MSH4O15457 AC004817.3-201ENST00000602957 2129 ntBASIC19.82■□□□□ 0.76
MSH4O15457 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC19.82■□□□□ 0.76
MSH4O15457 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSH4O15457 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
MSH4O15457 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSH4O15457 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
MSH4O15457 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
MSH4O15457 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSH4O15457 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSH4O15457 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSH4O15457 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
MSH4O15457 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
MSH4O15457 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSH4O15457 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
MSH4O15457 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
MSH4O15457 AC148477.5-201ENST00000625164 1645 ntBASIC19.81■□□□□ 0.76
MSH4O15457 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC19.81■□□□□ 0.76
MSH4O15457 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
MSH4O15457 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.81■□□□□ 0.76
MSH4O15457 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.81■□□□□ 0.76
MSH4O15457 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSH4O15457 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC19.81■□□□□ 0.76
MSH4O15457 SCARNA2-201ENST00000458748 420 ntBASIC19.81■□□□□ 0.76
MSH4O15457 BX005266.1-201ENST00000473402 457 ntBASIC19.81■□□□□ 0.76
MSH4O15457 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC19.81■□□□□ 0.76
MSH4O15457 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC19.81■□□□□ 0.76
MSH4O15457 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
MSH4O15457 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
MSH4O15457 AC021087.4-201ENST00000563761 564 ntBASIC19.81■□□□□ 0.76
MSH4O15457 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC19.81■□□□□ 0.76
MSH4O15457 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC19.81■□□□□ 0.76
MSH4O15457 SLC25A6P4-201ENST00000586535 553 ntBASIC19.81■□□□□ 0.76
MSH4O15457 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC19.81■□□□□ 0.76
MSH4O15457 KLK8-205ENST00000593490 267 ntTSL 3 BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms