Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
SMC1BQ8NDV3 CYP51A1P2-201ENST00000419457 1499 ntBASIC20.9■□□□□ 0.94
SMC1BQ8NDV3 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMC1BQ8NDV3 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SMC1BQ8NDV3 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SMC1BQ8NDV3 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC20.9■□□□□ 0.94
SMC1BQ8NDV3 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMC1BQ8NDV3 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMC1BQ8NDV3 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SMC1BQ8NDV3 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMC1BQ8NDV3 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMC1BQ8NDV3 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMC1BQ8NDV3 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SMC1BQ8NDV3 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SMC1BQ8NDV3 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.89■□□□□ 0.94
SMC1BQ8NDV3 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC20.89■□□□□ 0.94
SMC1BQ8NDV3 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 FAM58DP-201ENST00000428076 619 ntBASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 AC132938.5-201ENST00000624980 1813 ntBASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 ADK-206ENST00000541550 2222 ntTSL 2 BASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 AC007952.6-201ENST00000573168 2673 ntBASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 AC003957.1-201ENST00000625108 2673 ntBASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
SMC1BQ8NDV3 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 KLF4P1-201ENST00000412782 1185 ntBASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 NOP2-211ENST00000540228 668 ntTSL 2 BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 AC009118.2-201ENST00000613275 655 ntBASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 MYLKP1-201ENST00000509077 1580 ntBASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
SMC1BQ8NDV3 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
SMC1BQ8NDV3 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.87■□□□□ 0.93
SMC1BQ8NDV3 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMC1BQ8NDV3 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMC1BQ8NDV3 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC20.87■□□□□ 0.93
SMC1BQ8NDV3 GPS2P2-201ENST00000430745 888 ntBASIC20.87■□□□□ 0.93
SMC1BQ8NDV3 RBPMS2P1-201ENST00000437762 623 ntBASIC20.87■□□□□ 0.93
SMC1BQ8NDV3 RN7SL589P-201ENST00000481268 310 ntBASIC20.87■□□□□ 0.93
SMC1BQ8NDV3 AC079140.1-201ENST00000508039 487 ntBASIC20.87■□□□□ 0.93
SMC1BQ8NDV3 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC20.87■□□□□ 0.93
SMC1BQ8NDV3 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC20.87■□□□□ 0.93
SMC1BQ8NDV3 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
SMC1BQ8NDV3 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMC1BQ8NDV3 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
SMC1BQ8NDV3 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMC1BQ8NDV3 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMC1BQ8NDV3 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.87■□□□□ 0.93
SMC1BQ8NDV3 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.86■□□□□ 0.93
SMC1BQ8NDV3 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.86■□□□□ 0.93
SMC1BQ8NDV3 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMC1BQ8NDV3 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms