Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
RFX4Q33E94 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
RFX4Q33E94 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RFX4Q33E94 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RFX4Q33E94 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
RFX4Q33E94 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RFX4Q33E94 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
RFX4Q33E94 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RFX4Q33E94 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RFX4Q33E94 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RFX4Q33E94 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC16.51■□□□□ 0.23
RFX4Q33E94 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RFX4Q33E94 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RFX4Q33E94 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
RFX4Q33E94 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC16.51■□□□□ 0.23
RFX4Q33E94 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RFX4Q33E94 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
RFX4Q33E94 KRT18P23-201ENST00000435622 1283 ntBASIC16.51■□□□□ 0.23
RFX4Q33E94 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RFX4Q33E94 AL023803.3-201ENST00000615559 522 ntBASIC16.51■□□□□ 0.23
RFX4Q33E94 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
RFX4Q33E94 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RFX4Q33E94 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.51■□□□□ 0.23
RFX4Q33E94 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC16.51■□□□□ 0.23
RFX4Q33E94 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
RFX4Q33E94 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.51■□□□□ 0.23
RFX4Q33E94 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
RFX4Q33E94 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC16.51■□□□□ 0.23
RFX4Q33E94 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
RFX4Q33E94 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX4Q33E94 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.5■□□□□ 0.23
RFX4Q33E94 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX4Q33E94 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX4Q33E94 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX4Q33E94 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RFX4Q33E94 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX4Q33E94 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX4Q33E94 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX4Q33E94 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
RFX4Q33E94 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX4Q33E94 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RFX4Q33E94 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC16.5■□□□□ 0.23
RFX4Q33E94 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RFX4Q33E94 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX4Q33E94 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC16.5■□□□□ 0.23
RFX4Q33E94 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX4Q33E94 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC16.5■□□□□ 0.23
RFX4Q33E94 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC16.5■□□□□ 0.23
RFX4Q33E94 AGGF1P2-201ENST00000426656 2106 ntBASIC16.5■□□□□ 0.23
RFX4Q33E94 SLC25A1P2-201ENST00000430693 912 ntBASIC16.5■□□□□ 0.23
RFX4Q33E94 GCSHP5-201ENST00000443090 522 ntBASIC16.5■□□□□ 0.23
RFX4Q33E94 AL158047.1-201ENST00000445918 881 ntBASIC16.5■□□□□ 0.23
RFX4Q33E94 AC098590.1-201ENST00000468126 897 ntBASIC16.5■□□□□ 0.23
RFX4Q33E94 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC16.5■□□□□ 0.23
RFX4Q33E94 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC16.5■□□□□ 0.23
RFX4Q33E94 REXO2-216ENST00000544196 452 ntTSL 3 BASIC16.5■□□□□ 0.23
RFX4Q33E94 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.5■□□□□ 0.23
RFX4Q33E94 AL353719.1-201ENST00000566847 864 ntBASIC16.5■□□□□ 0.23
RFX4Q33E94 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC16.5■□□□□ 0.23
RFX4Q33E94 AC116407.2-201ENST00000613639 860 ntBASIC16.5■□□□□ 0.23
RFX4Q33E94 AC026471.5-201ENST00000615068 467 ntBASIC16.5■□□□□ 0.23
RFX4Q33E94 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RFX4Q33E94 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
RFX4Q33E94 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
RFX4Q33E94 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX4Q33E94 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
RFX4Q33E94 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
RFX4Q33E94 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX4Q33E94 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX4Q33E94 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
RFX4Q33E94 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
RFX4Q33E94 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX4Q33E94 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RFX4Q33E94 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
RFX4Q33E94 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RFX4Q33E94 AC100803.2-201ENST00000562459 1963 ntBASIC16.49■□□□□ 0.23
RFX4Q33E94 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.49■□□□□ 0.23
RFX4Q33E94 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.49■□□□□ 0.23
RFX4Q33E94 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX4Q33E94 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX4Q33E94 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RFX4Q33E94 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.49■□□□□ 0.23
RFX4Q33E94 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX4Q33E94 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX4Q33E94 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
RFX4Q33E94 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX4Q33E94 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RFX4Q33E94 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RFX4Q33E94 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RFX4Q33E94 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RFX4Q33E94 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RFX4Q33E94 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC16.49■□□□□ 0.23
RFX4Q33E94 TSPY17P-201ENST00000450329 467 ntBASIC16.49■□□□□ 0.23
RFX4Q33E94 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RFX4Q33E94 AP003041.3-201ENST00000527151 707 ntBASIC16.49■□□□□ 0.23
RFX4Q33E94 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC16.49■□□□□ 0.23
RFX4Q33E94 WWOX-216ENST00000569818 525 ntBASIC16.49■□□□□ 0.23
RFX4Q33E94 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC16.49■□□□□ 0.23
RFX4Q33E94 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RFX4Q33E94 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms