Protein–RNA interactions for Protein: Q9Y2X8

UBE2D4, Ubiquitin-conjugating enzyme E2 D4, humanhuman

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4Q9Y2X8 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
UBE2D4Q9Y2X8 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 AC011270.2-201ENST00000624293 2550 ntBASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 DDX43P3-201ENST00000441064 443 ntBASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 CCR12P-201ENST00000446203 998 ntBASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 BX088651.1-201ENST00000540551 451 ntBASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 AP001412.1-201ENST00000608405 714 ntBASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC12.37□□□□□ -0.43
UBE2D4Q9Y2X8 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 AC106886.4-201ENST00000623557 2502 ntBASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 HIST1H2APS4-201ENST00000362070 348 ntBASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 KRT18P29-201ENST00000397031 1267 ntBASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 AL355355.2-201ENST00000442321 338 ntBASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC12.36□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms