Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 AC103564.2-201ENST00000432853 1299 ntBASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 KRT18P3-201ENST00000451602 1288 ntBASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 BX005266.1-201ENST00000473402 457 ntBASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 PMPCAP1-201ENST00000508114 1576 ntBASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HDDC3Q8N4P3 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HDDC3Q8N4P3 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.77■□□□□ 0.44
HDDC3Q8N4P3 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HDDC3Q8N4P3 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
HDDC3Q8N4P3 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HDDC3Q8N4P3 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.77■□□□□ 0.44
HDDC3Q8N4P3 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HDDC3Q8N4P3 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
HDDC3Q8N4P3 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HDDC3Q8N4P3 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.77■□□□□ 0.44
HDDC3Q8N4P3 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.77■□□□□ 0.44
HDDC3Q8N4P3 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.77■□□□□ 0.44
HDDC3Q8N4P3 GPX1P2-201ENST00000429271 606 ntBASIC17.77■□□□□ 0.44
HDDC3Q8N4P3 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC17.77■□□□□ 0.44
HDDC3Q8N4P3 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HDDC3Q8N4P3 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.77■□□□□ 0.44
HDDC3Q8N4P3 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.44
HDDC3Q8N4P3 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC17.77■□□□□ 0.44
HDDC3Q8N4P3 AC040169.1-201ENST00000565382 521 ntBASIC17.77■□□□□ 0.44
HDDC3Q8N4P3 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC17.77■□□□□ 0.44
HDDC3Q8N4P3 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
HDDC3Q8N4P3 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HDDC3Q8N4P3 AP001160.2-201ENST00000596071 487 ntBASIC17.77■□□□□ 0.44
HDDC3Q8N4P3 AD001527.2-201ENST00000622994 785 ntBASIC17.77■□□□□ 0.44
HDDC3Q8N4P3 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
HDDC3Q8N4P3 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HDDC3Q8N4P3 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HDDC3Q8N4P3 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HDDC3Q8N4P3 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
HDDC3Q8N4P3 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.77■□□□□ 0.43
HDDC3Q8N4P3 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HDDC3Q8N4P3 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.43
HDDC3Q8N4P3 AL138781.2-201ENST00000617896 1843 ntBASIC17.77■□□□□ 0.43
HDDC3Q8N4P3 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HDDC3Q8N4P3 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HDDC3Q8N4P3 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 AC079776.2-201ENST00000641154 1609 ntBASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 RPSAP43-201ENST00000402237 625 ntBASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 DHDH-204ENST00000523250 634 ntTSL 5 BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms