Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC144BQ3MJ40 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC144BQ3MJ40 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC144BQ3MJ40 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC144BQ3MJ40 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
CCDC144BQ3MJ40 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC20.61■□□□□ 0.89
CCDC144BQ3MJ40 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC144BQ3MJ40 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
CCDC144BQ3MJ40 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC144BQ3MJ40 AC099343.3-201ENST00000605834 2503 ntBASIC20.61■□□□□ 0.89
CCDC144BQ3MJ40 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC144BQ3MJ40 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
CCDC144BQ3MJ40 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC144BQ3MJ40 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC144BQ3MJ40 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
CCDC144BQ3MJ40 FAM197Y8-203ENST00000450145 560 ntBASIC20.61■□□□□ 0.89
CCDC144BQ3MJ40 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC144BQ3MJ40 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC20.61■□□□□ 0.89
CCDC144BQ3MJ40 AP001005.1-201ENST00000571755 1248 ntBASIC20.61■□□□□ 0.89
CCDC144BQ3MJ40 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC20.61■□□□□ 0.89
CCDC144BQ3MJ40 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CCDC144BQ3MJ40 NME4-212ENST00000621774 904 ntTSL 3 BASIC20.61■□□□□ 0.89
CCDC144BQ3MJ40 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC144BQ3MJ40 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC144BQ3MJ40 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
CCDC144BQ3MJ40 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC144BQ3MJ40 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC20.61■□□□□ 0.89
CCDC144BQ3MJ40 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
CCDC144BQ3MJ40 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC144BQ3MJ40 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC144BQ3MJ40 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC144BQ3MJ40 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.6■□□□□ 0.89
CCDC144BQ3MJ40 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC144BQ3MJ40 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC144BQ3MJ40 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
CCDC144BQ3MJ40 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC144BQ3MJ40 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC144BQ3MJ40 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC144BQ3MJ40 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC144BQ3MJ40 MIR149-201ENST00000384879 89 ntBASIC20.6■□□□□ 0.89
CCDC144BQ3MJ40 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC144BQ3MJ40 DDT-203ENST00000403754 569 ntTSL 3 BASIC20.6■□□□□ 0.89
CCDC144BQ3MJ40 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC144BQ3MJ40 DDT-206ENST00000430101 573 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC144BQ3MJ40 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC144BQ3MJ40 AC096582.2-201ENST00000510860 516 ntBASIC20.6■□□□□ 0.89
CCDC144BQ3MJ40 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC20.6■□□□□ 0.89
CCDC144BQ3MJ40 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC20.6■□□□□ 0.89
CCDC144BQ3MJ40 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC144BQ3MJ40 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
CCDC144BQ3MJ40 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC144BQ3MJ40 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC144BQ3MJ40 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC144BQ3MJ40 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC144BQ3MJ40 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC144BQ3MJ40 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC144BQ3MJ40 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC144BQ3MJ40 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC144BQ3MJ40 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC144BQ3MJ40 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC144BQ3MJ40 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC144BQ3MJ40 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC144BQ3MJ40 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC20.59■□□□□ 0.89
CCDC144BQ3MJ40 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC144BQ3MJ40 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC20.59■□□□□ 0.89
CCDC144BQ3MJ40 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
CCDC144BQ3MJ40 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC144BQ3MJ40 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC20.59■□□□□ 0.89
CCDC144BQ3MJ40 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC144BQ3MJ40 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC20.59■□□□□ 0.89
CCDC144BQ3MJ40 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC20.59■□□□□ 0.89
CCDC144BQ3MJ40 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CCDC144BQ3MJ40 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC144BQ3MJ40 AL773604.1-201ENST00000617417 272 ntBASIC20.59■□□□□ 0.89
CCDC144BQ3MJ40 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC144BQ3MJ40 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC144BQ3MJ40 AC138028.4-201ENST00000564984 1845 ntBASIC20.59■□□□□ 0.89
CCDC144BQ3MJ40 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC144BQ3MJ40 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC144BQ3MJ40 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC144BQ3MJ40 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC144BQ3MJ40 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC20.58■□□□□ 0.89
CCDC144BQ3MJ40 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.89
CCDC144BQ3MJ40 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC144BQ3MJ40 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC144BQ3MJ40 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
CCDC144BQ3MJ40 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC144BQ3MJ40 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC144BQ3MJ40 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC144BQ3MJ40 AC113404.2-201ENST00000507884 177 ntBASIC20.58■□□□□ 0.89
CCDC144BQ3MJ40 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC144BQ3MJ40 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC144BQ3MJ40 AC114341.1-201ENST00000618070 349 ntBASIC20.58■□□□□ 0.89
CCDC144BQ3MJ40 AF228730.7-201ENST00000641842 219 ntBASIC20.58■□□□□ 0.89
CCDC144BQ3MJ40 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC20.58■□□□□ 0.89
CCDC144BQ3MJ40 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC144BQ3MJ40 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.88
CCDC144BQ3MJ40 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC144BQ3MJ40 UROS-202ENST00000368778 1556 ntTSL 2 BASIC20.58■□□□□ 0.88
CCDC144BQ3MJ40 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC20.58■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms