Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC12.69□□□□□ -0.38
PRKDCP78527 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
PRKDCP78527 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC12.69□□□□□ -0.38
PRKDCP78527 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
PRKDCP78527 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC12.69□□□□□ -0.38
PRKDCP78527 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC12.69□□□□□ -0.38
PRKDCP78527 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC12.69□□□□□ -0.38
PRKDCP78527 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
PRKDCP78527 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
PRKDCP78527 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
PRKDCP78527 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
PRKDCP78527 RN7SL589P-201ENST00000481268 310 ntBASIC12.69□□□□□ -0.38
PRKDCP78527 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC12.69□□□□□ -0.38
PRKDCP78527 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC12.69□□□□□ -0.38
PRKDCP78527 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC12.69□□□□□ -0.38
PRKDCP78527 AC140912.1-201ENST00000577171 1054 ntBASIC12.69□□□□□ -0.38
PRKDCP78527 AC026120.1-201ENST00000611536 926 ntBASIC12.69□□□□□ -0.38
PRKDCP78527 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
PRKDCP78527 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
PRKDCP78527 AL137060.1-201ENST00000618151 2648 ntBASIC12.69□□□□□ -0.38
PRKDCP78527 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC12.69□□□□□ -0.38
PRKDCP78527 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC12.69□□□□□ -0.38
PRKDCP78527 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC12.69□□□□□ -0.38
PRKDCP78527 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC12.69□□□□□ -0.38
PRKDCP78527 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
PRKDCP78527 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC12.69□□□□□ -0.38
PRKDCP78527 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC12.69□□□□□ -0.38
PRKDCP78527 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
PRKDCP78527 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC12.69□□□□□ -0.38
PRKDCP78527 SNAI3-AS1-205ENST00000568633 2096 ntBASIC12.69□□□□□ -0.38
PRKDCP78527 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
PRKDCP78527 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
PRKDCP78527 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC12.69□□□□□ -0.38
PRKDCP78527 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC12.69□□□□□ -0.38
PRKDCP78527 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC12.69□□□□□ -0.38
PRKDCP78527 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC12.69□□□□□ -0.38
PRKDCP78527 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC12.69□□□□□ -0.38
PRKDCP78527 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
PRKDCP78527 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
PRKDCP78527 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
PRKDCP78527 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
PRKDCP78527 AC092933.1-201ENST00000393644 945 ntBASIC12.68□□□□□ -0.38
PRKDCP78527 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
PRKDCP78527 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC12.68□□□□□ -0.38
PRKDCP78527 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC12.68□□□□□ -0.38
PRKDCP78527 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC12.68□□□□□ -0.38
PRKDCP78527 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC12.68□□□□□ -0.38
PRKDCP78527 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
PRKDCP78527 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
PRKDCP78527 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC12.68□□□□□ -0.38
PRKDCP78527 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
PRKDCP78527 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC12.68□□□□□ -0.38
PRKDCP78527 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
PRKDCP78527 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
PRKDCP78527 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
PRKDCP78527 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
PRKDCP78527 AC104794.3-201ENST00000566840 1248 ntBASIC12.68□□□□□ -0.38
PRKDCP78527 AP000842.3-202ENST00000569238 1080 ntBASIC12.68□□□□□ -0.38
PRKDCP78527 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
PRKDCP78527 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC12.68□□□□□ -0.38
PRKDCP78527 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
PRKDCP78527 GABARAPL3-202ENST00000624044 1851 ntBASIC12.68□□□□□ -0.38
PRKDCP78527 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
PRKDCP78527 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
PRKDCP78527 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC12.68□□□□□ -0.38
PRKDCP78527 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
PRKDCP78527 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
PRKDCP78527 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
PRKDCP78527 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
PRKDCP78527 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC12.68□□□□□ -0.38
PRKDCP78527 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
PRKDCP78527 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC12.68□□□□□ -0.38
PRKDCP78527 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
PRKDCP78527 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
PRKDCP78527 AL049812.1-201ENST00000432563 2267 ntBASIC12.68□□□□□ -0.38
PRKDCP78527 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
PRKDCP78527 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
PRKDCP78527 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
PRKDCP78527 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
PRKDCP78527 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC12.67□□□□□ -0.38
PRKDCP78527 AC141586.3-201ENST00000562166 1838 ntBASIC12.67□□□□□ -0.38
PRKDCP78527 RPF1-202ENST00000370656 724 ntTSL 2 BASIC12.67□□□□□ -0.38
PRKDCP78527 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC12.67□□□□□ -0.38
PRKDCP78527 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
PRKDCP78527 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
PRKDCP78527 RETN-203ENST00000629642 400 ntTSL 5 BASIC12.67□□□□□ -0.38
PRKDCP78527 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
PRKDCP78527 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC12.67□□□□□ -0.38
PRKDCP78527 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC12.67□□□□□ -0.38
PRKDCP78527 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
PRKDCP78527 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
PRKDCP78527 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC12.67□□□□□ -0.38
PRKDCP78527 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC12.67□□□□□ -0.38
PRKDCP78527 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
PRKDCP78527 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
PRKDCP78527 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
PRKDCP78527 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
PRKDCP78527 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
PRKDCP78527 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC12.67□□□□□ -0.38
PRKDCP78527 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms