Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH11P55287 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CDH11P55287 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH11P55287 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDH11P55287 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH11P55287 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH11P55287 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC16.3■□□□□ 0.2
CDH11P55287 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
CDH11P55287 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH11P55287 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH11P55287 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDH11P55287 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.29■□□□□ 0.2
CDH11P55287 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH11P55287 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH11P55287 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH11P55287 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH11P55287 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH11P55287 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH11P55287 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH11P55287 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH11P55287 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CDH11P55287 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDH11P55287 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.29■□□□□ 0.2
CDH11P55287 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC16.29■□□□□ 0.2
CDH11P55287 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC16.29■□□□□ 0.2
CDH11P55287 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH11P55287 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH11P55287 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC16.29■□□□□ 0.2
CDH11P55287 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CDH11P55287 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CDH11P55287 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDH11P55287 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC16.29■□□□□ 0.2
CDH11P55287 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC16.29■□□□□ 0.2
CDH11P55287 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.29■□□□□ 0.2
CDH11P55287 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH11P55287 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CDH11P55287 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
CDH11P55287 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH11P55287 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.29■□□□□ 0.2
CDH11P55287 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.29■□□□□ 0.2
CDH11P55287 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH11P55287 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.29■□□□□ 0.2
CDH11P55287 AL355312.1-201ENST00000407115 2176 ntBASIC16.28■□□□□ 0.2
CDH11P55287 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH11P55287 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH11P55287 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.28■□□□□ 0.2
CDH11P55287 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC16.28■□□□□ 0.2
CDH11P55287 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.28■□□□□ 0.2
CDH11P55287 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
CDH11P55287 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CDH11P55287 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH11P55287 LINC01126-201ENST00000623515 1646 ntBASIC16.28■□□□□ 0.2
CDH11P55287 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC16.28■□□□□ 0.2
CDH11P55287 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC16.28■□□□□ 0.2
CDH11P55287 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH11P55287 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC16.28■□□□□ 0.2
CDH11P55287 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.28■□□□□ 0.2
CDH11P55287 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.28■□□□□ 0.2
CDH11P55287 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC16.28■□□□□ 0.2
CDH11P55287 NEK4P2-201ENST00000580004 1012 ntBASIC16.28■□□□□ 0.2
CDH11P55287 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH11P55287 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH11P55287 AC091076.1-201ENST00000610741 619 ntBASIC16.28■□□□□ 0.2
CDH11P55287 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CDH11P55287 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH11P55287 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CDH11P55287 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH11P55287 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH11P55287 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH11P55287 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CDH11P55287 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH11P55287 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDH11P55287 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CDH11P55287 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CDH11P55287 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.27■□□□□ 0.2
CDH11P55287 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CDH11P55287 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CDH11P55287 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CDH11P55287 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC16.27■□□□□ 0.2
CDH11P55287 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.27■□□□□ 0.2
CDH11P55287 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
CDH11P55287 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
CDH11P55287 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.27■□□□□ 0.2
CDH11P55287 AC084018.2-201ENST00000613093 2607 ntBASIC16.27■□□□□ 0.2
CDH11P55287 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CDH11P55287 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
CDH11P55287 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CDH11P55287 KIRREL3-AS3-201ENST00000404882 831 ntBASIC16.27■□□□□ 0.2
CDH11P55287 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CDH11P55287 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC16.27■□□□□ 0.2
CDH11P55287 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC16.27■□□□□ 0.2
CDH11P55287 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC16.27■□□□□ 0.2
CDH11P55287 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC16.27■□□□□ 0.2
CDH11P55287 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CDH11P55287 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC16.27■□□□□ 0.2
CDH11P55287 ETFA-216ENST00000560726 942 ntTSL 3 BASIC16.27■□□□□ 0.2
CDH11P55287 CLN6-204ENST00000564752 900 ntTSL 3 BASIC16.27■□□□□ 0.2
CDH11P55287 NT5C-210ENST00000582160 860 ntTSL 2 BASIC16.27■□□□□ 0.2
CDH11P55287 DBP-204ENST00000599385 709 ntTSL 3 BASIC16.27■□□□□ 0.2
CDH11P55287 CR769767.2-201ENST00000622735 460 ntBASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms