Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC17.27■□□□□ 0.36
HOXC4P09017 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.27■□□□□ 0.36
HOXC4P09017 SLC25A1P1-201ENST00000528351 927 ntBASIC17.27■□□□□ 0.36
HOXC4P09017 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.27■□□□□ 0.36
HOXC4P09017 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.27■□□□□ 0.36
HOXC4P09017 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HOXC4P09017 AC004706.3-202ENST00000621574 984 ntBASIC17.27■□□□□ 0.36
HOXC4P09017 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.36
HOXC4P09017 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HOXC4P09017 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.27■□□□□ 0.35
HOXC4P09017 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
HOXC4P09017 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
HOXC4P09017 NCF1C-201ENST00000438382 1427 ntBASIC17.27■□□□□ 0.35
HOXC4P09017 AC004817.3-201ENST00000602957 2129 ntBASIC17.27■□□□□ 0.35
HOXC4P09017 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
HOXC4P09017 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HOXC4P09017 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.27■□□□□ 0.35
HOXC4P09017 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
HOXC4P09017 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.27■□□□□ 0.35
HOXC4P09017 ZNF259P1-201ENST00000407656 1365 ntBASIC17.27■□□□□ 0.35
HOXC4P09017 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
HOXC4P09017 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
HOXC4P09017 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HOXC4P09017 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
HOXC4P09017 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HOXC4P09017 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HOXC4P09017 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HOXC4P09017 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HOXC4P09017 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HOXC4P09017 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.26■□□□□ 0.35
HOXC4P09017 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
HOXC4P09017 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
HOXC4P09017 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HOXC4P09017 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HOXC4P09017 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.26■□□□□ 0.35
HOXC4P09017 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HOXC4P09017 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HOXC4P09017 AC148477.5-201ENST00000625164 1645 ntBASIC17.26■□□□□ 0.35
HOXC4P09017 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HOXC4P09017 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.26■□□□□ 0.35
HOXC4P09017 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HOXC4P09017 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HOXC4P09017 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.26■□□□□ 0.35
HOXC4P09017 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HOXC4P09017 AC073621.1-201ENST00000392730 636 ntBASIC17.26■□□□□ 0.35
HOXC4P09017 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC17.26■□□□□ 0.35
HOXC4P09017 AC098831.1-202ENST00000438821 336 ntBASIC17.26■□□□□ 0.35
HOXC4P09017 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.26■□□□□ 0.35
HOXC4P09017 AC092910.1-201ENST00000482027 1129 ntBASIC17.26■□□□□ 0.35
HOXC4P09017 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.26■□□□□ 0.35
HOXC4P09017 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.26■□□□□ 0.35
HOXC4P09017 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC17.26■□□□□ 0.35
HOXC4P09017 AL671883.3-201ENST00000603274 991 ntBASIC17.26■□□□□ 0.35
HOXC4P09017 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HOXC4P09017 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.26■□□□□ 0.35
HOXC4P09017 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.26■□□□□ 0.35
HOXC4P09017 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HOXC4P09017 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HOXC4P09017 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.26■□□□□ 0.35
HOXC4P09017 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.26■□□□□ 0.35
HOXC4P09017 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC4P09017 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.25■□□□□ 0.35
HOXC4P09017 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC4P09017 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC4P09017 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
HOXC4P09017 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
HOXC4P09017 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC4P09017 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.25■□□□□ 0.35
HOXC4P09017 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC4P09017 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.25■□□□□ 0.35
HOXC4P09017 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.25■□□□□ 0.35
HOXC4P09017 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.25■□□□□ 0.35
HOXC4P09017 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC4P09017 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.25■□□□□ 0.35
HOXC4P09017 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.25■□□□□ 0.35
HOXC4P09017 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.25■□□□□ 0.35
HOXC4P09017 AL356488.2-201ENST00000602755 427 ntBASIC17.25■□□□□ 0.35
HOXC4P09017 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC4P09017 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC4P09017 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.25■□□□□ 0.35
HOXC4P09017 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC4P09017 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC4P09017 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC4P09017 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC17.25■□□□□ 0.35
HOXC4P09017 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC4P09017 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
HOXC4P09017 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC4P09017 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC4P09017 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.24■□□□□ 0.35
HOXC4P09017 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC17.24■□□□□ 0.35
HOXC4P09017 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC4P09017 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.24■□□□□ 0.35
HOXC4P09017 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC4P09017 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
HOXC4P09017 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC4P09017 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC4P09017 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC4P09017 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC4P09017 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC4P09017 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms