Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 VPS29-207ENST00000549970 818 ntTSL 3 BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 NAA60-208ENST00000570819 833 ntTSL 2 BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 SLC25A24-204ENST00000569674 2357 ntBASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
ZNF541Q9H0D2 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
ZNF541Q9H0D2 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
ZNF541Q9H0D2 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
ZNF541Q9H0D2 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 UGT1A2P-201ENST00000454886 866 ntBASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 AC067863.1-201ENST00000494933 530 ntBASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 RN7SL204P-201ENST00000582831 262 ntBASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 STK25P1-201ENST00000585406 838 ntBASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 YTHDF3-AS1-201ENST00000603538 718 ntBASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 ANO7L1-203ENST00000602586 1720 ntBASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF541Q9H0D2 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF541Q9H0D2 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF541Q9H0D2 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF541Q9H0D2 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF541Q9H0D2 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF541Q9H0D2 AC007274.1-201ENST00000439805 662 ntBASIC21.13■□□□□ 0.97
ZNF541Q9H0D2 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC21.13■□□□□ 0.97
ZNF541Q9H0D2 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC21.13■□□□□ 0.97
ZNF541Q9H0D2 STK19B-204ENST00000512515 211 ntBASIC21.13■□□□□ 0.97
ZNF541Q9H0D2 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC21.13■□□□□ 0.97
ZNF541Q9H0D2 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC21.13■□□□□ 0.97
ZNF541Q9H0D2 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
ZNF541Q9H0D2 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF541Q9H0D2 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF541Q9H0D2 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC21.13■□□□□ 0.97
ZNF541Q9H0D2 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.13■□□□□ 0.97
ZNF541Q9H0D2 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
ZNF541Q9H0D2 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC21.13■□□□□ 0.97
ZNF541Q9H0D2 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF541Q9H0D2 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF541Q9H0D2 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZNF541Q9H0D2 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.12■□□□□ 0.97
ZNF541Q9H0D2 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC21.12■□□□□ 0.97
ZNF541Q9H0D2 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZNF541Q9H0D2 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZNF541Q9H0D2 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC21.12■□□□□ 0.97
ZNF541Q9H0D2 TERF1P3-201ENST00000505638 1227 ntBASIC21.12■□□□□ 0.97
ZNF541Q9H0D2 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC21.12■□□□□ 0.97
ZNF541Q9H0D2 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZNF541Q9H0D2 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC21.12■□□□□ 0.97
ZNF541Q9H0D2 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZNF541Q9H0D2 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
ZNF541Q9H0D2 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC21.12■□□□□ 0.97
ZNF541Q9H0D2 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZNF541Q9H0D2 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZNF541Q9H0D2 PI4KAP1-204ENST00000612579 1703 ntBASIC21.12■□□□□ 0.97
ZNF541Q9H0D2 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
ZNF541Q9H0D2 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF541Q9H0D2 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF541Q9H0D2 AC055876.3-201ENST00000431496 288 ntBASIC21.11■□□□□ 0.97
ZNF541Q9H0D2 OARD1-208ENST00000469104 704 ntTSL 2 BASIC21.11■□□□□ 0.97
ZNF541Q9H0D2 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC21.11■□□□□ 0.97
ZNF541Q9H0D2 KRT8P48-201ENST00000515599 1220 ntBASIC21.11■□□□□ 0.97
ZNF541Q9H0D2 AC051619.7-201ENST00000568314 623 ntBASIC21.11■□□□□ 0.97
ZNF541Q9H0D2 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
ZNF541Q9H0D2 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC21.11■□□□□ 0.97
ZNF541Q9H0D2 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC21.11■□□□□ 0.97
ZNF541Q9H0D2 AC138649.4-201ENST00000612222 287 ntBASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms