Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
NKX3-1Q99801 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC15.55■□□□□ 0.08
NKX3-1Q99801 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC15.55■□□□□ 0.08
NKX3-1Q99801 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC15.55■□□□□ 0.08
NKX3-1Q99801 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC15.55■□□□□ 0.08
NKX3-1Q99801 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC15.55■□□□□ 0.08
NKX3-1Q99801 GRAMD4P8-201ENST00000605465 1115 ntBASIC15.55■□□□□ 0.08
NKX3-1Q99801 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX3-1Q99801 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX3-1Q99801 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX3-1Q99801 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
NKX3-1Q99801 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
NKX3-1Q99801 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC15.55■□□□□ 0.08
NKX3-1Q99801 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX3-1Q99801 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
NKX3-1Q99801 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
NKX3-1Q99801 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX3-1Q99801 LINC00602-201ENST00000629776 2065 ntBASIC15.55■□□□□ 0.08
NKX3-1Q99801 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX3-1Q99801 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NKX3-1Q99801 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
NKX3-1Q99801 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NKX3-1Q99801 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC15.54■□□□□ 0.08
NKX3-1Q99801 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NKX3-1Q99801 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
NKX3-1Q99801 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC15.54■□□□□ 0.08
NKX3-1Q99801 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NKX3-1Q99801 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NKX3-1Q99801 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NKX3-1Q99801 AL023806.1-201ENST00000603994 1649 ntBASIC15.54■□□□□ 0.08
NKX3-1Q99801 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
NKX3-1Q99801 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
NKX3-1Q99801 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
NKX3-1Q99801 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.08
NKX3-1Q99801 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NKX3-1Q99801 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
NKX3-1Q99801 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NKX3-1Q99801 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC15.54■□□□□ 0.08
NKX3-1Q99801 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC15.54■□□□□ 0.08
NKX3-1Q99801 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC15.54■□□□□ 0.08
NKX3-1Q99801 AC087499.1-201ENST00000418141 1075 ntBASIC15.54■□□□□ 0.08
NKX3-1Q99801 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC15.54■□□□□ 0.08
NKX3-1Q99801 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC15.54■□□□□ 0.08
NKX3-1Q99801 AL353719.1-201ENST00000566847 864 ntBASIC15.54■□□□□ 0.08
NKX3-1Q99801 AP005242.2-201ENST00000580065 1175 ntBASIC15.54■□□□□ 0.08
NKX3-1Q99801 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NKX3-1Q99801 AC112497.1-201ENST00000624824 639 ntBASIC15.54■□□□□ 0.08
NKX3-1Q99801 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
NKX3-1Q99801 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
NKX3-1Q99801 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC15.54■□□□□ 0.08
NKX3-1Q99801 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
NKX3-1Q99801 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC15.54■□□□□ 0.08
NKX3-1Q99801 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
NKX3-1Q99801 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
NKX3-1Q99801 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
NKX3-1Q99801 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NKX3-1Q99801 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
NKX3-1Q99801 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
NKX3-1Q99801 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NKX3-1Q99801 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
NKX3-1Q99801 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
NKX3-1Q99801 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
NKX3-1Q99801 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
NKX3-1Q99801 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC15.53■□□□□ 0.08
NKX3-1Q99801 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC15.53■□□□□ 0.08
NKX3-1Q99801 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
NKX3-1Q99801 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
NKX3-1Q99801 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
NKX3-1Q99801 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
NKX3-1Q99801 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC15.53■□□□□ 0.08
NKX3-1Q99801 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC15.53■□□□□ 0.08
NKX3-1Q99801 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
NKX3-1Q99801 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
NKX3-1Q99801 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
NKX3-1Q99801 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
NKX3-1Q99801 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC15.53■□□□□ 0.08
NKX3-1Q99801 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC15.53■□□□□ 0.08
NKX3-1Q99801 MMP23A-201ENST00000234610 1017 ntBASIC15.53■□□□□ 0.08
NKX3-1Q99801 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
NKX3-1Q99801 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
NKX3-1Q99801 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
NKX3-1Q99801 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
NKX3-1Q99801 MIR1238-201ENST00000408483 83 ntBASIC15.53■□□□□ 0.08
NKX3-1Q99801 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
NKX3-1Q99801 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC15.53■□□□□ 0.08
NKX3-1Q99801 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC15.53■□□□□ 0.08
NKX3-1Q99801 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC15.53■□□□□ 0.08
NKX3-1Q99801 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC15.53■□□□□ 0.08
NKX3-1Q99801 NARF-204ENST00000390006 1766 ntTSL 2 BASIC15.53■□□□□ 0.08
NKX3-1Q99801 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
NKX3-1Q99801 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
NKX3-1Q99801 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
NKX3-1Q99801 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
NKX3-1Q99801 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
NKX3-1Q99801 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
NKX3-1Q99801 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
NKX3-1Q99801 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
NKX3-1Q99801 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC15.53■□□□□ 0.08
NKX3-1Q99801 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC15.53■□□□□ 0.08
NKX3-1Q99801 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms