Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 GABARAPL3-202ENST00000624044 1851 ntBASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 LINC01006-201ENST00000333319 2292 ntBASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SMC1BQ8NDV3 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC20.97■□□□□ 0.95
SMC1BQ8NDV3 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SMC1BQ8NDV3 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SMC1BQ8NDV3 AC092919.2-201ENST00000623631 1645 ntBASIC20.97■□□□□ 0.95
SMC1BQ8NDV3 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SMC1BQ8NDV3 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.97■□□□□ 0.95
SMC1BQ8NDV3 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SMC1BQ8NDV3 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SMC1BQ8NDV3 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC20.97■□□□□ 0.95
SMC1BQ8NDV3 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SMC1BQ8NDV3 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC20.97■□□□□ 0.95
SMC1BQ8NDV3 PTCHD3P3-201ENST00000403073 906 ntBASIC20.97■□□□□ 0.95
SMC1BQ8NDV3 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC20.97■□□□□ 0.95
SMC1BQ8NDV3 FAM86C2P-203ENST00000528684 1004 ntBASIC20.97■□□□□ 0.95
SMC1BQ8NDV3 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SMC1BQ8NDV3 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC20.97■□□□□ 0.95
SMC1BQ8NDV3 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC20.97■□□□□ 0.95
SMC1BQ8NDV3 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SMC1BQ8NDV3 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SMC1BQ8NDV3 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC20.97■□□□□ 0.95
SMC1BQ8NDV3 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.97■□□□□ 0.95
SMC1BQ8NDV3 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SMC1BQ8NDV3 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SMC1BQ8NDV3 AC010460.3-201ENST00000511359 1579 ntBASIC20.97■□□□□ 0.95
SMC1BQ8NDV3 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SMC1BQ8NDV3 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 KRT18P32-201ENST00000424695 1287 ntBASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 TSFM-210ENST00000550559 897 ntTSL 5 BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 AC148477.5-201ENST00000625164 1645 ntBASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMC1BQ8NDV3 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SMC1BQ8NDV3 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMC1BQ8NDV3 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
SMC1BQ8NDV3 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMC1BQ8NDV3 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMC1BQ8NDV3 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC20.95■□□□□ 0.94
SMC1BQ8NDV3 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SMC1BQ8NDV3 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMC1BQ8NDV3 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SMC1BQ8NDV3 SPDYE11-202ENST00000450699 704 ntBASIC20.95■□□□□ 0.94
SMC1BQ8NDV3 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMC1BQ8NDV3 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC20.95■□□□□ 0.94
SMC1BQ8NDV3 SPDYE9P-201ENST00000570642 692 ntBASIC20.95■□□□□ 0.94
SMC1BQ8NDV3 IFT20-216ENST00000588477 774 ntTSL 5 BASIC20.95■□□□□ 0.94
SMC1BQ8NDV3 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC20.95■□□□□ 0.94
SMC1BQ8NDV3 SPDYE10P-202ENST00000612005 668 ntBASIC20.95■□□□□ 0.94
SMC1BQ8NDV3 SPDYE8P-202ENST00000612377 668 ntBASIC20.95■□□□□ 0.94
SMC1BQ8NDV3 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
SMC1BQ8NDV3 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMC1BQ8NDV3 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMC1BQ8NDV3 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SMC1BQ8NDV3 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
SMC1BQ8NDV3 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.95■□□□□ 0.94
SMC1BQ8NDV3 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMC1BQ8NDV3 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMC1BQ8NDV3 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMC1BQ8NDV3 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
SMC1BQ8NDV3 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms