Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHMT2P34897 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SHMT2P34897 AC012615.1-201ENST00000565797 1299 ntBASIC17.42■□□□□ 0.38
SHMT2P34897 MIR3652-201ENST00000579335 131 ntBASIC17.42■□□□□ 0.38
SHMT2P34897 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC17.42■□□□□ 0.38
SHMT2P34897 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.42■□□□□ 0.38
SHMT2P34897 AL353801.3-201ENST00000609898 542 ntBASIC17.42■□□□□ 0.38
SHMT2P34897 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC17.42■□□□□ 0.38
SHMT2P34897 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SHMT2P34897 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.42■□□□□ 0.38
SHMT2P34897 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SHMT2P34897 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.42■□□□□ 0.38
SHMT2P34897 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHMT2P34897 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.42■□□□□ 0.38
SHMT2P34897 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
SHMT2P34897 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHMT2P34897 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.42■□□□□ 0.38
SHMT2P34897 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.42■□□□□ 0.38
SHMT2P34897 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHMT2P34897 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
SHMT2P34897 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
SHMT2P34897 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.42■□□□□ 0.38
SHMT2P34897 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.42■□□□□ 0.38
SHMT2P34897 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHMT2P34897 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC17.41■□□□□ 0.38
SHMT2P34897 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHMT2P34897 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SHMT2P34897 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.41■□□□□ 0.38
SHMT2P34897 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHMT2P34897 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHMT2P34897 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.41■□□□□ 0.38
SHMT2P34897 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.41■□□□□ 0.38
SHMT2P34897 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.41■□□□□ 0.38
SHMT2P34897 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SHMT2P34897 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.41■□□□□ 0.38
SHMT2P34897 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SHMT2P34897 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.41■□□□□ 0.38
SHMT2P34897 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.41■□□□□ 0.38
SHMT2P34897 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.41■□□□□ 0.38
SHMT2P34897 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHMT2P34897 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHMT2P34897 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHMT2P34897 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHMT2P34897 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHMT2P34897 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHMT2P34897 AC104819.1-201ENST00000504587 486 ntBASIC17.41■□□□□ 0.38
SHMT2P34897 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC17.41■□□□□ 0.38
SHMT2P34897 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.41■□□□□ 0.38
SHMT2P34897 ABR-204ENST00000543210 1049 ntTSL 2 BASIC17.41■□□□□ 0.38
SHMT2P34897 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SHMT2P34897 ABR-217ENST00000572441 563 ntTSL 4 BASIC17.41■□□□□ 0.38
SHMT2P34897 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.41■□□□□ 0.38
SHMT2P34897 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SHMT2P34897 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC17.41■□□□□ 0.38
SHMT2P34897 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC17.41■□□□□ 0.38
SHMT2P34897 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHMT2P34897 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC17.41■□□□□ 0.38
SHMT2P34897 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHMT2P34897 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHMT2P34897 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
SHMT2P34897 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHMT2P34897 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHMT2P34897 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.41■□□□□ 0.38
SHMT2P34897 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHMT2P34897 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
SHMT2P34897 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHMT2P34897 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHMT2P34897 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
SHMT2P34897 GNAS-203ENST00000306120 1878 ntBASIC17.4■□□□□ 0.38
SHMT2P34897 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
SHMT2P34897 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.4■□□□□ 0.38
SHMT2P34897 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
SHMT2P34897 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SHMT2P34897 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
SHMT2P34897 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SHMT2P34897 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHMT2P34897 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
SHMT2P34897 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SHMT2P34897 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SHMT2P34897 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC17.4■□□□□ 0.38
SHMT2P34897 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHMT2P34897 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.4■□□□□ 0.38
SHMT2P34897 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC17.4■□□□□ 0.38
SHMT2P34897 AC112698.1-201ENST00000510299 916 ntBASIC17.4■□□□□ 0.38
SHMT2P34897 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC17.4■□□□□ 0.38
SHMT2P34897 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SHMT2P34897 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHMT2P34897 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.4■□□□□ 0.38
SHMT2P34897 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SHMT2P34897 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC17.4■□□□□ 0.38
SHMT2P34897 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SHMT2P34897 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SHMT2P34897 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.4■□□□□ 0.38
SHMT2P34897 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHMT2P34897 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.4■□□□□ 0.38
SHMT2P34897 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHMT2P34897 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHMT2P34897 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
SHMT2P34897 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHMT2P34897 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms