Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TPM1P09493 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
TPM1P09493 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC19.63■□□□□ 0.73
TPM1P09493 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC19.63■□□□□ 0.73
TPM1P09493 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC19.62■□□□□ 0.73
TPM1P09493 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
TPM1P09493 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC19.62■□□□□ 0.73
TPM1P09493 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM1P09493 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC19.62■□□□□ 0.73
TPM1P09493 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TPM1P09493 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TPM1P09493 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TPM1P09493 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC19.62■□□□□ 0.73
TPM1P09493 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
TPM1P09493 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC19.62■□□□□ 0.73
TPM1P09493 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TPM1P09493 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM1P09493 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM1P09493 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM1P09493 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM1P09493 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM1P09493 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
TPM1P09493 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TPM1P09493 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
TPM1P09493 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19.62■□□□□ 0.73
TPM1P09493 SLC25A1P2-201ENST00000430693 912 ntBASIC19.62■□□□□ 0.73
TPM1P09493 AP003041.3-201ENST00000527151 707 ntBASIC19.62■□□□□ 0.73
TPM1P09493 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM1P09493 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC19.62■□□□□ 0.73
TPM1P09493 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM1P09493 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM1P09493 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM1P09493 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
TPM1P09493 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM1P09493 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM1P09493 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM1P09493 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TPM1P09493 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
TPM1P09493 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC19.61■□□□□ 0.73
TPM1P09493 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TPM1P09493 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
TPM1P09493 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
TPM1P09493 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
TPM1P09493 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.61■□□□□ 0.73
TPM1P09493 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TPM1P09493 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.61■□□□□ 0.73
TPM1P09493 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TPM1P09493 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TPM1P09493 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TPM1P09493 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TPM1P09493 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.61■□□□□ 0.73
TPM1P09493 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC19.61■□□□□ 0.73
TPM1P09493 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC19.61■□□□□ 0.73
TPM1P09493 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC19.61■□□□□ 0.73
TPM1P09493 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.61■□□□□ 0.73
TPM1P09493 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TPM1P09493 AC116407.2-201ENST00000613639 860 ntBASIC19.61■□□□□ 0.73
TPM1P09493 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.61■□□□□ 0.73
TPM1P09493 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TPM1P09493 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
TPM1P09493 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
TPM1P09493 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TPM1P09493 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TPM1P09493 AC011270.2-201ENST00000624293 2550 ntBASIC19.61■□□□□ 0.73
TPM1P09493 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TPM1P09493 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
TPM1P09493 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
TPM1P09493 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TPM1P09493 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC19.61■□□□□ 0.73
TPM1P09493 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TPM1P09493 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TPM1P09493 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TPM1P09493 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TPM1P09493 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TPM1P09493 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TPM1P09493 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TPM1P09493 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TPM1P09493 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TPM1P09493 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC19.6■□□□□ 0.73
TPM1P09493 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TPM1P09493 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TPM1P09493 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC19.6■□□□□ 0.73
TPM1P09493 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TPM1P09493 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TPM1P09493 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TPM1P09493 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TPM1P09493 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TPM1P09493 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
TPM1P09493 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TPM1P09493 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TPM1P09493 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.6■□□□□ 0.73
TPM1P09493 CD99P1-205ENST00000527459 561 ntBASIC19.6■□□□□ 0.73
TPM1P09493 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.6■□□□□ 0.73
TPM1P09493 AP005242.2-201ENST00000580065 1175 ntBASIC19.6■□□□□ 0.73
TPM1P09493 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
TPM1P09493 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TPM1P09493 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
TPM1P09493 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TPM1P09493 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TPM1P09493 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms