Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
LDB3O75112 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.76■□□□□ 0.27
LDB3O75112 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
LDB3O75112 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.76■□□□□ 0.27
LDB3O75112 Z69720.1-201ENST00000601483 472 ntBASIC16.76■□□□□ 0.27
LDB3O75112 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.76■□□□□ 0.27
LDB3O75112 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.76■□□□□ 0.27
LDB3O75112 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LDB3O75112 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LDB3O75112 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LDB3O75112 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LDB3O75112 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
LDB3O75112 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
LDB3O75112 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LDB3O75112 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LDB3O75112 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LDB3O75112 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LDB3O75112 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LDB3O75112 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.75■□□□□ 0.27
LDB3O75112 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LDB3O75112 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LDB3O75112 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LDB3O75112 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LDB3O75112 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
LDB3O75112 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
LDB3O75112 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
LDB3O75112 SLC25A6P5-201ENST00000435663 894 ntBASIC16.75■□□□□ 0.27
LDB3O75112 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.75■□□□□ 0.27
LDB3O75112 AC074051.2-201ENST00000565115 352 ntBASIC16.75■□□□□ 0.27
LDB3O75112 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.75■□□□□ 0.27
LDB3O75112 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.75■□□□□ 0.27
LDB3O75112 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LDB3O75112 AC116407.2-201ENST00000613639 860 ntBASIC16.75■□□□□ 0.27
LDB3O75112 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.75■□□□□ 0.27
LDB3O75112 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
LDB3O75112 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
LDB3O75112 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
LDB3O75112 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
LDB3O75112 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
LDB3O75112 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
LDB3O75112 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.75■□□□□ 0.27
LDB3O75112 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
LDB3O75112 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
LDB3O75112 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LDB3O75112 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LDB3O75112 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.75■□□□□ 0.27
LDB3O75112 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.75■□□□□ 0.27
LDB3O75112 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC16.75■□□□□ 0.27
LDB3O75112 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LDB3O75112 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LDB3O75112 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LDB3O75112 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
LDB3O75112 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
LDB3O75112 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LDB3O75112 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LDB3O75112 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LDB3O75112 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC16.74■□□□□ 0.27
LDB3O75112 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
LDB3O75112 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC16.74■□□□□ 0.27
LDB3O75112 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
LDB3O75112 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LDB3O75112 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LDB3O75112 KRT17P6-201ENST00000453795 1220 ntBASIC16.74■□□□□ 0.27
LDB3O75112 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.74■□□□□ 0.27
LDB3O75112 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.74■□□□□ 0.27
LDB3O75112 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.74■□□□□ 0.27
LDB3O75112 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.74■□□□□ 0.27
LDB3O75112 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
LDB3O75112 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.74■□□□□ 0.27
LDB3O75112 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LDB3O75112 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LDB3O75112 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LDB3O75112 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LDB3O75112 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LDB3O75112 AC005332.8-201ENST00000622750 2735 ntBASIC16.74■□□□□ 0.27
LDB3O75112 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
LDB3O75112 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LDB3O75112 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
LDB3O75112 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LDB3O75112 AC006116.8-202ENST00000587620 1550 ntBASIC16.73■□□□□ 0.27
LDB3O75112 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
LDB3O75112 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.73■□□□□ 0.27
LDB3O75112 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
LDB3O75112 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
LDB3O75112 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LDB3O75112 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
LDB3O75112 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LDB3O75112 AC104819.1-201ENST00000504587 486 ntBASIC16.73■□□□□ 0.27
LDB3O75112 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.73■□□□□ 0.27
LDB3O75112 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.73■□□□□ 0.27
LDB3O75112 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
LDB3O75112 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LDB3O75112 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.73■□□□□ 0.27
LDB3O75112 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LDB3O75112 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
LDB3O75112 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.73■□□□□ 0.27
LDB3O75112 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.73■□□□□ 0.27
LDB3O75112 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.73■□□□□ 0.27
LDB3O75112 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LDB3O75112 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms