Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC22.37■■□□□ 1.17
NPHP1O15259 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC22.37■■□□□ 1.17
NPHP1O15259 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC22.37■■□□□ 1.17
NPHP1O15259 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
NPHP1O15259 COA5-202ENST00000409997 557 ntTSL 4 BASIC22.37■■□□□ 1.17
NPHP1O15259 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC22.37■■□□□ 1.17
NPHP1O15259 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC22.37■■□□□ 1.17
NPHP1O15259 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC22.37■■□□□ 1.17
NPHP1O15259 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
NPHP1O15259 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC22.37■■□□□ 1.17
NPHP1O15259 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC22.37■■□□□ 1.17
NPHP1O15259 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC22.37■■□□□ 1.17
NPHP1O15259 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC22.37■■□□□ 1.17
NPHP1O15259 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
NPHP1O15259 AC064836.3-201ENST00000607928 673 ntBASIC22.37■■□□□ 1.17
NPHP1O15259 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
NPHP1O15259 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC22.37■■□□□ 1.17
NPHP1O15259 PGM5P2-202ENST00000637225 1043 ntBASIC22.37■■□□□ 1.17
NPHP1O15259 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
NPHP1O15259 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
NPHP1O15259 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
NPHP1O15259 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
NPHP1O15259 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC22.37■■□□□ 1.17
NPHP1O15259 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
NPHP1O15259 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
NPHP1O15259 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
NPHP1O15259 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC22.36■■□□□ 1.17
NPHP1O15259 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
NPHP1O15259 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
NPHP1O15259 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
NPHP1O15259 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
NPHP1O15259 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
NPHP1O15259 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
NPHP1O15259 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
NPHP1O15259 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC22.36■■□□□ 1.17
NPHP1O15259 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
NPHP1O15259 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC22.36■■□□□ 1.17
NPHP1O15259 AC108751.1-201ENST00000490852 363 ntBASIC22.36■■□□□ 1.17
NPHP1O15259 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
NPHP1O15259 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
NPHP1O15259 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
NPHP1O15259 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
NPHP1O15259 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
NPHP1O15259 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
NPHP1O15259 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC22.35■■□□□ 1.17
NPHP1O15259 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC22.35■■□□□ 1.17
NPHP1O15259 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC22.35■■□□□ 1.17
NPHP1O15259 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
NPHP1O15259 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
NPHP1O15259 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
NPHP1O15259 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
NPHP1O15259 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC22.35■■□□□ 1.17
NPHP1O15259 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
NPHP1O15259 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
NPHP1O15259 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC22.35■■□□□ 1.17
NPHP1O15259 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
NPHP1O15259 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
NPHP1O15259 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
NPHP1O15259 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
NPHP1O15259 AC211486.1-202ENST00000416371 468 ntBASIC22.35■■□□□ 1.17
NPHP1O15259 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC22.35■■□□□ 1.17
NPHP1O15259 AC211476.1-201ENST00000503899 468 ntBASIC22.35■■□□□ 1.17
NPHP1O15259 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
NPHP1O15259 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC22.35■■□□□ 1.17
NPHP1O15259 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC22.35■■□□□ 1.17
NPHP1O15259 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC22.35■■□□□ 1.17
NPHP1O15259 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC22.35■■□□□ 1.17
NPHP1O15259 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC22.35■■□□□ 1.17
NPHP1O15259 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
NPHP1O15259 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
NPHP1O15259 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC22.35■■□□□ 1.17
NPHP1O15259 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
NPHP1O15259 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
NPHP1O15259 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC22.35■■□□□ 1.17
NPHP1O15259 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC22.35■■□□□ 1.17
NPHP1O15259 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC22.35■■□□□ 1.17
NPHP1O15259 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
NPHP1O15259 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
NPHP1O15259 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
NPHP1O15259 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
NPHP1O15259 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
NPHP1O15259 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
NPHP1O15259 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC22.34■■□□□ 1.17
NPHP1O15259 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC22.34■■□□□ 1.17
NPHP1O15259 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
NPHP1O15259 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
NPHP1O15259 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC22.34■■□□□ 1.17
NPHP1O15259 DNAJB3-202ENST00000449667 1266 ntBASIC22.34■■□□□ 1.17
NPHP1O15259 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
NPHP1O15259 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC22.34■■□□□ 1.17
NPHP1O15259 AL596442.2-201ENST00000610240 980 ntBASIC22.34■■□□□ 1.17
NPHP1O15259 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
NPHP1O15259 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
NPHP1O15259 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
NPHP1O15259 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
NPHP1O15259 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
NPHP1O15259 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
NPHP1O15259 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
NPHP1O15259 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC22.33■■□□□ 1.17
NPHP1O15259 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms