Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col13a1Q9R1N9 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
Col13a1Q9R1N9 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Col13a1Q9R1N9 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
Col13a1Q9R1N9 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col13a1Q9R1N9 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col13a1Q9R1N9 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Col13a1Q9R1N9 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Col13a1Q9R1N9 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC18.91■□□□□ 0.62
Col13a1Q9R1N9 Gm18755-201ENSMUST00000218030 1099 ntBASIC18.91■□□□□ 0.62
Col13a1Q9R1N9 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC18.91■□□□□ 0.62
Col13a1Q9R1N9 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Col13a1Q9R1N9 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col13a1Q9R1N9 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC18.91■□□□□ 0.62
Col13a1Q9R1N9 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC18.91■□□□□ 0.62
Col13a1Q9R1N9 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC18.9■□□□□ 0.62
Col13a1Q9R1N9 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Col13a1Q9R1N9 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Col13a1Q9R1N9 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col13a1Q9R1N9 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col13a1Q9R1N9 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Col13a1Q9R1N9 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col13a1Q9R1N9 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col13a1Q9R1N9 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Col13a1Q9R1N9 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC18.89■□□□□ 0.61
Col13a1Q9R1N9 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Col13a1Q9R1N9 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col13a1Q9R1N9 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col13a1Q9R1N9 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col13a1Q9R1N9 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Col13a1Q9R1N9 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col13a1Q9R1N9 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
Col13a1Q9R1N9 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col13a1Q9R1N9 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
Col13a1Q9R1N9 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Col13a1Q9R1N9 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col13a1Q9R1N9 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col13a1Q9R1N9 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col13a1Q9R1N9 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Col13a1Q9R1N9 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Col13a1Q9R1N9 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col13a1Q9R1N9 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col13a1Q9R1N9 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Col13a1Q9R1N9 Etf1-202ENSMUST00000180351 108 ntBASIC18.86■□□□□ 0.61
Col13a1Q9R1N9 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Col13a1Q9R1N9 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Col13a1Q9R1N9 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col13a1Q9R1N9 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC18.85■□□□□ 0.61
Col13a1Q9R1N9 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Col13a1Q9R1N9 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col13a1Q9R1N9 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col13a1Q9R1N9 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col13a1Q9R1N9 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col13a1Q9R1N9 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col13a1Q9R1N9 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col13a1Q9R1N9 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC18.83■□□□□ 0.6
Col13a1Q9R1N9 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col13a1Q9R1N9 Gm5297-201ENSMUST00000198555 1171 ntBASIC18.83■□□□□ 0.6
Col13a1Q9R1N9 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col13a1Q9R1N9 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col13a1Q9R1N9 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
Col13a1Q9R1N9 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Col13a1Q9R1N9 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col13a1Q9R1N9 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col13a1Q9R1N9 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col13a1Q9R1N9 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col13a1Q9R1N9 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col13a1Q9R1N9 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col13a1Q9R1N9 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Col13a1Q9R1N9 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col13a1Q9R1N9 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col13a1Q9R1N9 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col13a1Q9R1N9 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col13a1Q9R1N9 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col13a1Q9R1N9 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC18.8■□□□□ 0.6
Col13a1Q9R1N9 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col13a1Q9R1N9 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Col13a1Q9R1N9 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col13a1Q9R1N9 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC18.79■□□□□ 0.6
Col13a1Q9R1N9 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC18.79■□□□□ 0.6
Col13a1Q9R1N9 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC18.79■□□□□ 0.6
Col13a1Q9R1N9 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col13a1Q9R1N9 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col13a1Q9R1N9 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC18.79■□□□□ 0.6
Col13a1Q9R1N9 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC18.79■□□□□ 0.6
Col13a1Q9R1N9 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col13a1Q9R1N9 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col13a1Q9R1N9 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col13a1Q9R1N9 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col13a1Q9R1N9 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col13a1Q9R1N9 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col13a1Q9R1N9 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col13a1Q9R1N9 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col13a1Q9R1N9 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC18.77■□□□□ 0.6
Col13a1Q9R1N9 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col13a1Q9R1N9 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col13a1Q9R1N9 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Col13a1Q9R1N9 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Col13a1Q9R1N9 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col13a1Q9R1N9 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC18.76■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 184.2 ms