Protein–RNA interactions for Protein: Q8K2I2

Cchcr1, Coiled-coil alpha-helical rod protein 1, mousemouse

Predictions only

Length 770 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cchcr1Q8K2I2 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC26.34■■□□□ 1.81
Cchcr1Q8K2I2 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
Cchcr1Q8K2I2 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Cchcr1Q8K2I2 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC26.33■■□□□ 1.81
Cchcr1Q8K2I2 Gm45364-201ENSMUST00000210883 159 ntBASIC26.33■■□□□ 1.81
Cchcr1Q8K2I2 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Cchcr1Q8K2I2 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Cchcr1Q8K2I2 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Cchcr1Q8K2I2 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
Cchcr1Q8K2I2 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Cchcr1Q8K2I2 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC26.31■■□□□ 1.8
Cchcr1Q8K2I2 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Cchcr1Q8K2I2 Gm6934-201ENSMUST00000194780 1905 ntBASIC26.3■■□□□ 1.8
Cchcr1Q8K2I2 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
Cchcr1Q8K2I2 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC26.3■■□□□ 1.8
Cchcr1Q8K2I2 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
Cchcr1Q8K2I2 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
Cchcr1Q8K2I2 Terc-201ENSMUST00000082862 423 ntBASIC26.29■■□□□ 1.8
Cchcr1Q8K2I2 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Cchcr1Q8K2I2 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Cchcr1Q8K2I2 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Cchcr1Q8K2I2 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Cchcr1Q8K2I2 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Cchcr1Q8K2I2 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
Cchcr1Q8K2I2 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Cchcr1Q8K2I2 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC26.27■■□□□ 1.8
Cchcr1Q8K2I2 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
Cchcr1Q8K2I2 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Cchcr1Q8K2I2 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Cchcr1Q8K2I2 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Cchcr1Q8K2I2 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC26.26■■□□□ 1.79
Cchcr1Q8K2I2 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Cchcr1Q8K2I2 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Cchcr1Q8K2I2 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Cchcr1Q8K2I2 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Cchcr1Q8K2I2 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC26.25■■□□□ 1.79
Cchcr1Q8K2I2 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
Cchcr1Q8K2I2 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC26.24■■□□□ 1.79
Cchcr1Q8K2I2 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
Cchcr1Q8K2I2 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC26.23■■□□□ 1.79
Cchcr1Q8K2I2 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Cchcr1Q8K2I2 AC167019.3-201ENSMUST00000228225 1266 ntBASIC26.23■■□□□ 1.79
Cchcr1Q8K2I2 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Cchcr1Q8K2I2 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC26.23■■□□□ 1.79
Cchcr1Q8K2I2 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Cchcr1Q8K2I2 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC26.22■■□□□ 1.79
Cchcr1Q8K2I2 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Cchcr1Q8K2I2 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
Cchcr1Q8K2I2 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
Cchcr1Q8K2I2 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Cchcr1Q8K2I2 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Cchcr1Q8K2I2 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
Cchcr1Q8K2I2 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
Cchcr1Q8K2I2 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
Cchcr1Q8K2I2 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC26.2■■□□□ 1.79
Cchcr1Q8K2I2 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC26.2■■□□□ 1.78
Cchcr1Q8K2I2 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC26.2■■□□□ 1.78
Cchcr1Q8K2I2 Gm17641-201ENSMUST00000166328 2350 ntBASIC26.2■■□□□ 1.78
Cchcr1Q8K2I2 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC26.19■■□□□ 1.78
Cchcr1Q8K2I2 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC26.19■■□□□ 1.78
Cchcr1Q8K2I2 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Cchcr1Q8K2I2 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC26.19■■□□□ 1.78
Cchcr1Q8K2I2 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Cchcr1Q8K2I2 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC26.18■■□□□ 1.78
Cchcr1Q8K2I2 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC26.18■■□□□ 1.78
Cchcr1Q8K2I2 Gm28731-201ENSMUST00000185564 1569 ntBASIC26.18■■□□□ 1.78
Cchcr1Q8K2I2 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC26.18■■□□□ 1.78
Cchcr1Q8K2I2 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
Cchcr1Q8K2I2 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
Cchcr1Q8K2I2 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC26.18■■□□□ 1.78
Cchcr1Q8K2I2 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Cchcr1Q8K2I2 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
Cchcr1Q8K2I2 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC26.17■■□□□ 1.78
Cchcr1Q8K2I2 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC26.17■■□□□ 1.78
Cchcr1Q8K2I2 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Cchcr1Q8K2I2 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC26.17■■□□□ 1.78
Cchcr1Q8K2I2 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Cchcr1Q8K2I2 Pkd1-207ENSMUST00000228550 1050 ntBASIC26.17■■□□□ 1.78
Cchcr1Q8K2I2 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Cchcr1Q8K2I2 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC26.16■■□□□ 1.78
Cchcr1Q8K2I2 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.78
Cchcr1Q8K2I2 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Cchcr1Q8K2I2 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Cchcr1Q8K2I2 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Cchcr1Q8K2I2 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
Cchcr1Q8K2I2 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC26.15■■□□□ 1.78
Cchcr1Q8K2I2 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
Cchcr1Q8K2I2 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC26.15■■□□□ 1.78
Cchcr1Q8K2I2 Gm7199-201ENSMUST00000118327 1485 ntBASIC26.15■■□□□ 1.78
Cchcr1Q8K2I2 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC26.14■■□□□ 1.78
Cchcr1Q8K2I2 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Cchcr1Q8K2I2 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Cchcr1Q8K2I2 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
Cchcr1Q8K2I2 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
Cchcr1Q8K2I2 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
Cchcr1Q8K2I2 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC26.14■■□□□ 1.77
Cchcr1Q8K2I2 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC26.13■■□□□ 1.77
Cchcr1Q8K2I2 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Cchcr1Q8K2I2 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Cchcr1Q8K2I2 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Retrieved 100 of 76,532 protein–RNA pairs in 10.6 ms